Factsheet for GSMUA_Achr4P01380_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr6P14510_001
GSMUA_Achr7P20310_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22780.1	GSMUA_Achr10P...	AT1G29260.1	24879895
AT2G22780.1	GSMUA_Achr6P14510_001	AT1G29260.1	24879895
AT2G22780.1	GSMUA_Achr7P20310_001	AT5G56290.1	24879895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0088g01190.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	86.52	86.52
GSMUA_Achr5P02000_001	Banana	unclear	85.39	85.39
KRH49884	Soybean	endoplasmic reticulum, nucleus	83.43	83.43
KRH42019	Soybean	nucleus	83.15	83.15
Bra009397.1-P	Field mustard	cytosol	83.43	82.96
Bra028624.1-P	Field mustard	cytosol	83.43	82.96
CDX85803	Canola	plastid	83.43	82.96
CDY44813	Canola	cytosol	83.43	82.96
CDY21594	Canola	cytosol	83.15	82.68
Solyc02g063490.2.1	Tomato	plastid	81.74	82.67
PGSC0003DMT400013106	Potato	cytosol	82.58	82.35
PGSC0003DMT400026930	Potato	plastid	81.18	82.1
KRH28298	Soybean	endoplasmic reticulum, nucleus	80.34	81.02
CDY25631	Canola	plastid	78.93	79.6
Bra030204.1-P	Field mustard	cytosol	78.93	79.6
AT2G22780.1	Thale cress	cytosol	78.93	79.38
CDX89514	Canola	cytosol	78.65	79.32
KRH77189	Soybean	endoplasmic reticulum	62.08	76.47
AT5G09660.4	Thale cress	cytosol	73.6	72.18
KRH48807	Soybean	mitochondrion	29.49	70.95
VIT_00s0373g00040.t01	Wine grape	peroxisome	83.71	68.66
CDY43430	Canola	cytosol	32.87	67.63
CDY17513	Canola	cytosol	29.21	66.67
GSMUA_Achr4P08580_001	Banana	mitochondrion	60.11	61.67
GSMUA_AchrUn_...	Banana	mitochondrion, unclear	60.11	61.49
CDX69893	Canola	cytosol	83.43	53.8
GSMUA_Achr5P23320_001	Banana	peroxisome	46.07	52.23
GSMUA_Achr6P02650_001	Banana	plastid	57.02	48.8
GSMUA_Achr7P11540_001	Banana	plastid	55.62	47.6
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	44.94	42.78
CDY34030	Canola	mitochondrion	31.74	40.5

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.7.3.6.5	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060
GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr4G01380_001	EnsemblPlants:GSMUA_Achr4P01380_001	EnsemblPlants:GSMUA_Achr4T01380_001	InterPro:IPR015955	InterPro:L-lactate/malate_DH
InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C	UniProt:M0SK55	InterPro:Malate_DH_AS	InterPro:Malate_DH_type1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102	ScanProsite:PS00068	PANTHER:PTHR11540
PANTHER:PTHR11540:SF21	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI000294F831	SEG:seg

Description

Malate dehydrogenase, glyoxysomal [Source:GMGC_GENE;Acc:GSMUA_Achr4G01380_001]

Coordinates

chr4:+:1171313..1176291

Molecular Weight (calculated)

37247.5 Da

IEP (calculated)

8.682

GRAVY (calculated)

0.184

Length

356 amino acids

Sequence
(BLAST)

001: MQRNGEASRR IASISAHLHP PSPPMQGSTS LRRADCRAKG GAPGFKVAIL GAAGGIGQPL ALLMKMNPLV SVLHLYDVVN SPGVTADVSH MDTGAVVRGF
101: LGAPQLENAL VGMDLVIIPA GVPRKPGMTR DDLFKINAGI VRTLCEGVAK CCPHAIVNLI SNPVNSTVPI AAEVFKKAGI YDPKRLLGVT TLDVVRANTF
201: VAEVLGIDPR EVNVPVVGGH SGVTILPLLS QVKPPCSFTS EEIYHLTNRI QNGGTEVVEA KAGAGSATLS MAFAAAKFAD ACLRGLRGDA GIVECAFVAS
301: QVTELPFFAS KVRLGRGGAE EIFPLGPLSE YERAGLDKAK EELAGSIEKG VSFIRK

Best Arabidopsis Sequence Match ( AT5G09660.1 )
(BLAST)

001: MEFRGDANQR IARISAHLTP QMEAKNSVIG RENCRAKGGN PGFKVAILGA AGGIGQSLSL LMKMNPLVSL LHLYDVVNAP GVTADVSHMD TGAVVRGFLG
101: AKQLEDALTG MDLVIIPAGI PRKPGMTRDD LFKINAGIVK TLCEGVAKCC PNAIVNLISN PVNSTVPIAA EVFKKAGTYD PKKLLGVTTL DVARANTFVA
201: EVLGLDPREV DVPVVGGHAG VTILPLLSQV KPPSSFTPQE IEYLTNRIQN GGTEVVEAKA GAGSATLSMA YAAAKFADAC LRGLRGDANV VECSFVASQV
301: TELAFFATKV RLGRTGAEEV YQLGPLNEYE RIGLEKAKDE LAGSIQKGVE FIRK

Arabidopsis Description

PMDH2Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:B3H560]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.