Factsheet for AT5G09660.4

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44813	Canola	cytosol	81.82	82.96
Bra028624.1-P	Field mustard	cytosol	81.82	82.96
CDX85803	Canola	plastid	81.82	82.96
CDY21594	Canola	cytosol	81.27	82.4
Bra009397.1-P	Field mustard	cytosol	80.72	81.84
KRH42019	Soybean	nucleus	73.55	75.0
KRH49884	Soybean	endoplasmic reticulum, nucleus	72.73	74.16
GSMUA_Achr4P01380_001	Banana	plasma membrane	72.18	73.6
AT2G22780.1	Thale cress	cytosol	70.25	72.03
Os12t0632700-01	Rice	extracellular, nucleus, plastid	70.25	71.63
TraesCS5D01G019700.1	Wheat	nucleus	69.97	70.95
TraesCS5A01G014300.1	Wheat	nucleus, plastid	69.7	70.67
TraesCS5B01G012400.1	Wheat	cytosol	69.7	70.67
Zm00001d041243_P001	Maize	mitochondrion	69.15	69.72
HORVU5Hr1G002010.1	Barley	plastid	70.25	62.35
KXG24112	Sorghum	plastid	68.87	56.05
AT3G15020.1	Thale cress	mitochondrion	51.24	54.55
CDX69893	Canola	cytosol	80.72	53.08
AT1G53240.1	Thale cress	mitochondrion	49.86	53.08
AT3G47520.1	Thale cress	plastid	50.69	45.66
AT3G53910.1	Thale cress	cytosol	5.23	17.59

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.7.3.6.5	EntrezGene:830825	ProteinID:AED91424.1
ProteinID:AED91425.1	ArrayExpress:AT5G09660	EnsemblPlantsGene:AT5G09660	RefSeq:AT5G09660	TAIR:AT5G09660	RefSeq:AT5G09660-TAIR-G
EnsemblPlants:AT5G09660.4	TAIR:AT5G09660.4	Unigene:At.47611	UniProt:B3H560	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005777	GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009507	GO:GO:0009536	GO:GO:0009719
GO:GO:0009735	GO:GO:0009941	GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616
GO:GO:0019752	GO:GO:0030060	GO:GO:0031998	GO:GO:0042579	GO:GO:0048046	GO:GO:0055114
GO:GO:0080093	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	RefSeq:NP_001078556.1	RefSeq:NP_001119199.1	PFAM:PF00056
PFAM:PF02866	PIRSF:PIRSF000102	Symbol:PMDH2	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0006339	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007131	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009001
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	ScanProsite:PS00068
PANTHER:PTHR11540	PANTHER:PTHR11540:SF21	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772	UniParc:UPI00017394B4

Description

PMDH2Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:B3H560]

Coordinates

chr5:-:2993444..2995675

Molecular Weight (calculated)

38741.0 Da

IEP (calculated)

9.287

GRAVY (calculated)

0.032

Length

363 amino acids

Sequence
(BLAST)

001: MEFRGDANQR IARISAHLTP QMEAKNSVIG RENCRAKGGN PGFKVAILGA AGGIGQSLSL LMKMNPLVSL LHLYDVVNAP GVTADVSHMD TGAVVRGFLG
101: AKQLEDALTG MDLVIIPAGI PRKPGMTRDD LFKINAGIVK TLCEGVAKCC PNAIVNLISN PVNSTVPIAA EVFKKAGTYD PKKLLGVTTL DVARANTFVA
201: EVLGLDPREV DVPVVGGHAG VTILPLLSQV KPPSSFTPQE IEYLTNRIQN GGTEVVEAKA GAGSATLSMA YAAAKFADAC LRGLRGDANV VECSFVASQV
301: NLENSFTLFH CFNGFNLKWQ LTTGDRISFL CNKSAPWPYR SRGSVSAWTL KRIRKDWSGE SKR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.