Factsheet for TraesCS5B01G012400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3D01G373900.1
TraesCS6A01G105000.1
TraesCS7A01G241500.5
TraesCS7B01G137000.2
TraesCS7D01G240500.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22780.1	TraesCS3D01G373900.1	AT1G29260.1	24879895
AT2G22780.1	TraesCS6A01G105000.1	AT5G56290.1	24879895
AT2G22780.1	TraesCS7A01G241500.5	AT5G56290.1	24879895
AT2G22780.1	TraesCS7B01G137000.2	AT5G56290.1	24879895
AT2G22780.1	TraesCS7D01G240500.3	AT5G56290.1	24879895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G019700.1	Wheat	nucleus	97.49	97.49
TraesCS5A01G014300.1	Wheat	nucleus, plastid	97.49	97.49
Os12t0632700-01	Rice	extracellular, nucleus, plastid	90.78	91.29
Zm00001d041243_P001	Maize	mitochondrion	87.43	86.94
GSMUA_Achr5P02000_001	Banana	unclear	86.03	86.52
HORVU5Hr1G002010.1	Barley	plastid	98.32	86.06
VIT_03s0088g01190.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	81.56	82.02
KRH49884	Soybean	endoplasmic reticulum, nucleus	80.73	81.18
KRH42019	Soybean	nucleus	80.45	80.9
KRH28298	Soybean	endoplasmic reticulum, nucleus	79.61	80.74
PGSC0003DMT400026930	Potato	plastid	78.49	79.83
Solyc02g063490.2.1	Tomato	plastid	78.21	79.55
PGSC0003DMT400013106	Potato	cytosol	79.05	79.27
AT2G22780.1	Thale cress	cytosol	77.93	78.81
CDY44813	Canola	cytosol	78.77	78.77
CDX85803	Canola	plastid	78.77	78.77
Bra028624.1-P	Field mustard	cytosol	78.77	78.77
CDY21594	Canola	cytosol	78.21	78.21
Bra009397.1-P	Field mustard	cytosol	77.93	77.93
CDY25631	Canola	plastid	76.82	77.9
Bra030204.1-P	Field mustard	cytosol	76.82	77.9
CDX89514	Canola	cytosol	75.98	77.05
KRH77189	Soybean	endoplasmic reticulum	61.45	76.12
TraesCS5B01G412500.1	Wheat	plastid	78.49	75.34
KXG24112	Sorghum	plastid	90.22	72.42
KRH48807	Soybean	mitochondrion	29.89	72.3
AT5G09660.4	Thale cress	cytosol	70.67	69.7
VIT_00s0373g00040.t01	Wine grape	peroxisome	81.01	66.82
CDY43430	Canola	cytosol	32.12	66.47
TraesCS3B01G265000.1	Wheat	golgi, mitochondrion, unclear	63.13	66.47
CDY17513	Canola	cytosol	28.21	64.74
TraesCS1B01G443200.1	Wheat	extracellular, mitochondrion	61.17	64.22
TraesCS7B01G289400.1	Wheat	plastid	57.54	52.28
CDX69893	Canola	cytosol	77.93	50.54
TraesCS1B01G363100.1	Wheat	plastid	55.59	50.0
CDY34030	Canola	mitochondrion	31.28	40.14

Protein Annotations

KEGG:00020+1.1.1.37	KEGG:00270+1.1.1.37	KEGG:00620+1.1.1.37	KEGG:00630+1.1.1.37	KEGG:00680+1.1.1.37	KEGG:00710+1.1.1.37
KEGG:00720+1.1.1.37	Gene3D:3.40.50.720	Gene3D:3.90.110.10	MapMan:5.7.3.6.5	GO:GO:0003674	GO:GO:0003824
GO:GO:0005975	GO:GO:0006091	GO:GO:0006099	GO:GO:0006108	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016615	GO:GO:0016616	GO:GO:0019752	GO:GO:0030060
GO:GO:0055114	InterPro:IPR015955	InterPro:L-lactate/malate_DH	InterPro:Lactate/malate_DH_C	InterPro:Lactate/malate_DH_N	InterPro:Lactate_DH/Glyco_Ohase_4_C
InterPro:Malate_DH_AS	InterPro:Malate_DH_type1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00056	PFAM:PF02866	PIRSF:PIRSF000102
ScanProsite:PS00068	PANTHER:PTHR11540	PANTHER:PTHR11540:SF21	SUPFAM:SSF51735	SUPFAM:SSF56327	TIGRFAMs:TIGR01772
EnsemblPlantsGene:TraesCS5B01G012400	EnsemblPlants:TraesCS5B01G012400.1	TIGR:cd01337	SEG:seg	:	:

Description

No Description!

Coordinates

chr5B:-:12330285..12334504

Molecular Weight (calculated)

37258.3 Da

IEP (calculated)

8.278

GRAVY (calculated)

0.183

Length

358 amino acids

Sequence
(BLAST)

001: MEQGADSAAA RRMARVASHL RPPTSQEEEV AILKGSNCRA KGAAPGFKVA VLGASGGIGQ PLSLLMKMNP LVSVLHLYDV VNTPGVTADI SHMNTGAVVR
101: GFLGQPQLES ALTGMDLVII PAGIPRKPGM TRDDLFNINA GIVRTLCGGI AKCCPNAIVN VISNPVNSTV PIAAEVFKKA GTYDPKRLLG VTTLDVVRAN
201: TFVGEVLGLD PRDVNVPVVG GHAGVTILPL LSQVNPPCSF TSEEISYLTS RIQNGGTEVV EAKAGAGSAT LSMAYAAARF ADACLRGLRG DAGIVECSYI
301: ASQVTELAFF ASKVRLGRAG VEEVLPLGPL NEFERAGLEK AKGELAESIR KGVAFANK

Best Arabidopsis Sequence Match ( AT5G09660.1 )
(BLAST)

001: MEFRGDANQR IARISAHLTP QMEAKNSVIG RENCRAKGGN PGFKVAILGA AGGIGQSLSL LMKMNPLVSL LHLYDVVNAP GVTADVSHMD TGAVVRGFLG
101: AKQLEDALTG MDLVIIPAGI PRKPGMTRDD LFKINAGIVK TLCEGVAKCC PNAIVNLISN PVNSTVPIAA EVFKKAGTYD PKKLLGVTTL DVARANTFVA
201: EVLGLDPREV DVPVVGGHAG VTILPLLSQV KPPSSFTPQE IEYLTNRIQN GGTEVVEAKA GAGSATLSMA YAAAKFADAC LRGLRGDANV VECSFVASQV
301: TELAFFATKV RLGRTGAEEV YQLGPLNEYE RIGLEKAKDE LAGSIQKGVE FIRK

Arabidopsis Description

PMDH2Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:B3H560]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.