Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0245100-01 | Rice | cytosol, golgi, plastid | 92.74 | 91.3 |
| EES04830 | Sorghum | cytosol, peroxisome, plastid | 89.59 | 88.47 |
| Zm00001d016170_P001 | Maize | cytosol | 88.33 | 87.77 |
| GSMUA_Achr6P14510_001 | Banana | cytosol, mitochondrion, peroxisome, plastid | 68.14 | 67.92 |
| Bra032295.1-P | Field mustard | cytosol | 64.98 | 64.98 |
| CDX99799 | Canola | cytosol | 64.98 | 64.98 |
| Bra010844.1-P | Field mustard | cytosol | 64.67 | 64.67 |
| CDY43325 | Canola | cytosol | 64.67 | 64.67 |
| CDY50786 | Canola | cytosol | 64.67 | 64.67 |
| CDX90175 | Canola | cytosol | 64.35 | 64.35 |
| AT1G29260.1 | Thale cress | cytosol | 63.72 | 63.72 |
| PGSC0003DMT400023242 | Potato | cytosol | 62.46 | 62.66 |
| PGSC0003DMT400022498 | Potato | cytosol | 62.46 | 62.66 |
| Solyc03g062940.2.1 | Tomato | cytosol | 61.83 | 62.03 |
| KRH21268 | Soybean | cytosol | 61.83 | 61.64 |
| KRH11018 | Soybean | cytosol | 59.62 | 61.36 |
| HORVU3Hr1G082800.3 | Barley | cytosol, mitochondrion | 59.94 | 59.01 |
| VIT_10s0003g01320.t01 | Wine grape | cytosol | 63.41 | 51.54 |
| GSMUA_Achr10P... | Banana | mitochondrion | 47.63 | 47.19 |
| TraesCS5D01G385800.1 | Wheat | cytosol | 15.14 | 21.52 |
| TraesCS5D01G337800.1 | Wheat | cytosol | 23.34 | 18.32 |
| TraesCS5D01G385600.1 | Wheat | nucleus | 24.29 | 17.99 |
| TraesCS4D01G126000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 23.66 | 15.56 |
| TraesCS3D01G251300.2 | Wheat | nucleus | 21.77 | 14.65 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:23.4.1.1.2 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006625 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF183 | SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS3D01G373900 |
| EnsemblPlants:TraesCS3D01G373900.1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| TIGR:cd00200 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:487375822..487378247
Molecular Weight (calculated)
34901.1 Da
IEP (calculated)
6.401
GRAVY (calculated)
-0.223
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSFKAPAPG FSVRFSPFHE HRXXXATSQH FGLVGNGHLL VLDLSAAGPG LTPLFSFPTS DALFDCAWSE SHDSLCAAAS GDGSVRLFDV TLPPAQNPVR
101: LLREHAREVH GIDWNPVRRD AFLSASWDDT LKLWSPDRPA SVRTFRGHEY CVYAAAWSAR HPDVFASASG DHTARVWDVR EPGPTLVIPA HDHEVLSLDW
201: DKYDPSILAT GSVDKSIRIW DVRSPQAPLA QLAGHGYAVK RVKFSPHRQG MLMSCSYDMT VCMWDYRKED ALLQRYGHHT EFVAGIDMSV LTDGLLASTG
301: WDEMIYVWPF GSDPRAM
101: LLREHAREVH GIDWNPVRRD AFLSASWDDT LKLWSPDRPA SVRTFRGHEY CVYAAAWSAR HPDVFASASG DHTARVWDVR EPGPTLVIPA HDHEVLSLDW
201: DKYDPSILAT GSVDKSIRIW DVRSPQAPLA QLAGHGYAVK RVKFSPHRQG MLMSCSYDMT VCMWDYRKED ALLQRYGHHT EFVAGIDMSV LTDGLLASTG
301: WDEMIYVWPF GSDPRAM
001: MPVFKAPFNG YSVKFSPFYE SRLAVATAQN FGILGNGRIH VLELAPGAPG VTESVSYDTA DAVYDVCWSE SHDSVLIAAI GDGSVKIYDT ALPPPSNPIR
101: SFQEHAREVQ SVDYNPTRRD SFLTSSWDDT VKLWAMDRPA SVRTFKEHAY CVYQAVWNPK HGDVFASASG DCTLRIWDVR EPGSTMIIPA HDFEILSCDW
201: NKYDDCILAT SSVDKTVKVW DVRSYRVPLA VLNGHGYAVR KVKFSPHRRS LIASCSYDMS VCLWDYMVED ALVGRYDHHT EFAVGIDMSV LVEGLMASTG
301: WDELVYVWQQ GMDPRAS
101: SFQEHAREVQ SVDYNPTRRD SFLTSSWDDT VKLWAMDRPA SVRTFKEHAY CVYQAVWNPK HGDVFASASG DCTLRIWDVR EPGSTMIIPA HDFEILSCDW
201: NKYDDCILAT SSVDKTVKVW DVRSYRVPLA VLNGHGYAVR KVKFSPHRRS LIASCSYDMS VCLWDYMVED ALVGRYDHHT EFAVGIDMSV LVEGLMASTG
301: WDELVYVWQQ GMDPRAS
Arabidopsis Description
PEX7Peroxisome biogenesis protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9XF57]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.