Factsheet for TraesCS4D01G050100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G144300.2
TraesCS1B01G161700.1
TraesCS1D01G143400.1
TraesCS4A01G463700.1
TraesCS5A01G355500.1
TraesCS5D01G363800.1
TraesCS7A01G025300.1
TraesCS7D01G023200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64520.1	TraesCS1A01G144300.2	AT3G01410.1	21798944
AT1G64520.1	TraesCS1B01G161700.1	AT3G01410.1	21798944
AT1G64520.1	TraesCS1D01G143400.1	AT3G01410.1	21798944
AT1G64520.1	TraesCS4A01G463700.1	AT3G01410.1	21798944
AT1G64520.1	TraesCS5A01G355500.1	AT3G01410.1	21798944
AT1G64520.1	TraesCS5D01G363800.1	AT3G01410.1	21798944
AT1G64520.1	TraesCS7A01G025300.1	AT3G01410.1	21798944
AT1G64520.1	TraesCS7D01G023200.1	AT3G01410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G049700.1	Wheat	cytosol	100.0	96.25
TraesCS7D01G059900.1	Wheat	cytosol	98.44	94.76
Os07t0435100-01	Rice	cytosol, plasma membrane, plastid	82.1	79.03
EES13525	Sorghum	cytosol	79.77	76.78
Zm00001d024319_P001	Maize	cytosol, extracellular	78.99	76.03
GSMUA_Achr11P...	Banana	cytosol	77.82	74.91
VIT_02s0025g02010.t01	Wine grape	cytosol	77.43	74.53
KRH42301	Soybean	nucleus	76.65	73.78
GSMUA_Achr1P21260_001	Banana	cytosol	76.65	73.78
KRH58430	Soybean	nucleus	77.04	72.26
PGSC0003DMT400031956	Potato	cytosol	73.54	70.79
Solyc08g082700.2.1	Tomato	cytosol, extracellular, nucleus, plastid	72.76	70.04
CDY69533	Canola	cytosol	72.37	69.66
CDY62022	Canola	extracellular	72.37	69.66
CDY47840	Canola	cytosol	72.37	69.66
Bra040915.1-P	Field mustard	cytosol	72.37	69.66
Bra027705.1-P	Field mustard	cytosol	72.37	69.66
AT1G64520.1	Thale cress	nucleus	71.21	68.54
Zm00001d039483_P001	Maize	cytosol	78.99	62.65
AT5G42040.1	Thale cress	cytosol	55.64	61.37
TraesCS4D01G012200.1	Wheat	mitochondrion	21.79	56.57
Zm00001d019655_P001	Maize	cytosol	14.4	56.06
TraesCS2D01G424200.1	Wheat	cytosol	57.59	55.64
Zm00001d040137_P001	Maize	cytosol	32.68	55.63

Protein Annotations

EnsemblPlants:TraesCS4D01G050100.1	EnsemblPlantsGene:TraesCS4D01G050100	Gene3D:1.25.40.990	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005838	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0019538	InterPro:26S_Psome_Rpn12
InterPro:CSN8_PSD8_EIF3K	InterPro:IPR000717	InterPro:PCI_dom	PANTHER:PTHR12387	PFAM:PF10075	PFscan:PS50250
MapMan:19.2.6.2.2.11	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:25692940..25695994

Molecular Weight (calculated)

29634.5 Da

IEP (calculated)

4.601

GRAVY (calculated)

-0.323

Length

257 amino acids

Sequence
(BLAST)

001: MDPKLVEVTQ LFDRFKAAFK ASNFDVLLTK FPSLPPLFQQ TPNAVEELKL AREIYEQAVI LSVKMEDQDA FERDFCQLKP YYMDTCGIIP PSSEEYPIMG
101: ANLLRLLVQN RIAEFHTELE LLPAKALDNA YIKHGVELEQ SFMEGAYNRV LSARQTAPHE TYIYFMDLLV KTVRDEIAGC SEKGYDYLSI NDAKQMFKFS
201: SDKELEQYIA EEHPEWDVKD GRVLFQKVKE SQPCKEIPAA PVINQTLGYA RELERIV

Best Arabidopsis Sequence Match ( AT1G64520.1 )
(BLAST)

001: MDPQLTEVSQ QFERFKAAFA RKDYNTCSDL LSQLKVLLTK FTSLPPLFEN SPNAAKELTI ARDIYEHAVV LSVKTEDQDA FERDFFQLKP YYVDARNRIP
101: QSPQENLILG LNLLRLLVQN RIAEFHTELE LLSSATLEDP CIKHAVELEQ SFMEGAYNRV LSARQTAPDA TYVYFMDLLA KTIRDEIAGC SEKAYDYVSI
201: SDARQMLLFS SDQELLTYVT DEHPEWEVKE GFVVFQKAKE TAPCKEIPSL QLINQTLSYA RELERIV

Arabidopsis Description

RPN12ARPN12a [Source:UniProtKB/TrEMBL;Acc:A0A178WH62]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.