Factsheet for TraesCS1B01G161700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	71.05	58.33
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	70.3	57.72
KXG38410	Sorghum	cytosol	59.4	54.11
Zm00001d032798_P001	Maize	nucleus	58.65	53.42
Os10t0458700-02	Rice	nucleus, plasma membrane	62.03	51.08
PGSC0003DMT400085909	Potato	cytosol	16.54	38.6
PGSC0003DMT400040239	Potato	nucleus	40.98	37.72
Solyc02g087140.2.1	Tomato	cytosol	40.6	37.37
Solyc04g005010.2.1	Tomato	nucleus	39.85	37.32
GSMUA_Achr9P16450_001	Banana	nucleus	25.56	36.36
Solyc02g087130.2.1	Tomato	nucleus	39.1	36.11
KRH18596	Soybean	nucleus	38.35	36.04
PGSC0003DMT400042267	Potato	nucleus	40.98	35.97
VIT_01s0026g00690.t01	Wine grape	mitochondrion	44.74	35.95
Solyc01g008060.2.1	Tomato	nucleus	40.6	35.64
CDX74301	Canola	mitochondrion	24.06	35.16
CDX91946	Canola	cytosol	24.81	34.02
Bra040514.1-P	Field mustard	nucleus	38.35	33.66
CDY28678	Canola	nucleus	38.35	33.66
AT3G01410.1	Thale cress	nucleus	36.84	33.33
CDX74299	Canola	cytosol	24.44	33.16
KRG93392	Soybean	nucleus	18.8	32.68
KRH45746	Soybean	nucleus	41.73	31.18
KRG99252	Soybean	mitochondrion	40.98	30.97
GSMUA_Achr9P17780_001	Banana	mitochondrion	36.09	30.57
CDY71303	Canola	nucleus	23.31	30.54
AT5G51080.1	Thale cress	mitochondrion	36.84	30.43
Solyc05g006090.2.1	Tomato	nucleus	40.98	29.7
PGSC0003DMT400004838	Potato	extracellular	40.23	29.23
AT1G24090.1	Thale cress	mitochondrion, plastid	37.59	28.33
CDY16247	Canola	cytosol, nucleus, plastid	37.59	25.77
CDY60797	Canola	golgi, nucleus, plastid	37.97	16.64
CDY16246	Canola	mitochondrion	11.65	14.35
Bra024633.1-P	Field mustard	cytosol, nucleus, plastid	26.69	11.89

Protein Annotations

MapMan:15.3.7.2.2	Gene3D:3.30.420.10	Gene3D:3.40.970.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004518	GO:GO:0004523	GO:GO:0005488	GO:GO:0016787	InterPro:IPR002156
InterPro:IPR036397	InterPro:IPR037056	PFAM:PF01693	PFAM:PF13456	PFscan:PS50879	PANTHER:PTHR33033
PANTHER:PTHR33033:SF50	InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf	InterPro:RNase_H1_N	InterPro:RNase_H1_N_sf
SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS1B01G161700	EnsemblPlants:TraesCS1B01G161700.1	TIGR:cd09279	SEG:seg	:

Description

No Description!

Coordinates

chr1B:+:279176062..279183214

Molecular Weight (calculated)

29821.8 Da

IEP (calculated)

8.866

GRAVY (calculated)

-0.247

Length

266 amino acids

Sequence
(BLAST)

001: MEEGSDYYVV KKGDMVAVYE TLNDCQAQIC SSGPAASAYK GYCWSKEKAE YFSSRGLINA SYTISAAELR EDLLGALVPC TFQASYVQEK YVTTQPSNVT
101: SYFLSNDNFG GAARRRAQEG RPGAFCSRPG KREGISFLIL ISRLREGLGV VTNNVAEYRG LILGLKYAIR LGFKRIKVYG DSQLVCYQVK GTWQAKKENM
201: MELCKEVRKL QENFISFEVH HVRREWNSEA DRQANIAITL ARSVTAALAC VPPLKGSLLY MMYHCN

Best Arabidopsis Sequence Match ( AT1G24090.1 )
(BLAST)

001: MNCLSHARSY IALGLLKRSS YVSSIPWNEC FFYMPSKSCL KPVAVSSVFG ICSVHSYSSR SKAVKSKMLS STVVSAVDKE KDAFFVVRKG DVIGIYKDLS
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA

Arabidopsis Description

RNase H domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7R5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.