Factsheet for PGSC0003DMT400085909

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
plasma membrane 1
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G067140.3	Barley	nucleus	43.86	33.33
GSMUA_Achr9P16450_001	Banana	nucleus	48.25	29.41
CDX91946	Canola	cytosol	49.12	28.87
CDX74299	Canola	cytosol	49.12	28.57
CDX74301	Canola	mitochondrion	43.86	27.47
Zm00001d049892_P001	Maize	mitochondrion	52.63	25.32
Solyc02g087130.2.1	Tomato	nucleus	62.28	24.65
CDY71303	Canola	nucleus	43.86	24.63
Solyc02g087140.2.1	Tomato	cytosol	62.28	24.57
PGSC0003DMT400040239	Potato	nucleus	55.26	21.8
KXG38410	Sorghum	cytosol	54.39	21.23
KRH18596	Soybean	nucleus	52.63	21.2
PGSC0003DMT400042267	Potato	nucleus	56.14	21.12
Zm00001d032798_P001	Maize	nucleus	53.51	20.89
AT3G01410.1	Thale cress	nucleus	51.75	20.07
Bra040514.1-P	Field mustard	nucleus	52.63	19.8
CDY28678	Canola	nucleus	52.63	19.8
Os10t0458700-02	Rice	nucleus, plasma membrane	53.51	18.89
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	51.75	18.21
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	51.75	18.21
PGSC0003DMT400004838	Potato	extracellular	57.89	18.03
Zm00001d035750_P001	Maize	plastid	46.49	17.49
KXG21007	Sorghum	mitochondrion	50.88	17.11
Os08t0177800-00	Rice	mitochondrion	52.63	17.09
TraesCS1B01G161700.1	Wheat	cytosol	38.6	16.54
GSMUA_Achr9P17780_001	Banana	mitochondrion	44.74	16.24
TraesCS4A01G463700.1	Wheat	plastid	49.12	16.14
TraesCS7A01G025300.1	Wheat	mitochondrion	49.12	16.14
TraesCS7D01G023200.1	Wheat	mitochondrion	49.12	16.05
TraesCS5A01G355500.1	Wheat	plastid	46.49	15.54
TraesCS5D01G363800.1	Wheat	golgi, mitochondrion	47.37	13.71
GSMUA_Achr9P16430_001	Banana	plasma membrane	11.4	7.18

Protein Annotations

MapMan:15.3.7.2.2	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518
GO:GO:0004523	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0090502	InterPro:IPR002156	InterPro:IPR036397	UniProt:M1DAJ4	PFAM:PF13456
EnsemblPlantsGene:PGSC0003DMG400035480	PGSC:PGSC0003DMG400035480	EnsemblPlants:PGSC0003DMT400085909	PFscan:PS50879	PANTHER:PTHR33033	PANTHER:PTHR33033:SF30
InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf	SUPFAM:SSF53098	UniParc:UPI0002959AFE	SEG:seg

Description

Nuclease [Source:PGSC_GENE;Acc:PGSC0003DMG400035480]

Coordinates

chr2:-:26280621..26281582

Molecular Weight (calculated)

12755.5 Da

IEP (calculated)

8.462

GRAVY (calculated)

0.212

Length

114 amino acids

Sequence
(BLAST)

001: MQKEEAQLFP HMQFHAFLNF DGASKGNPGL AGAGAVLRAV DGSVVYWLRE GLGFATNNVA EYRGVILGLK YVLEKGFKHI QVQGDSKLVC MQVMYSLSFI
101: AISKEHYFLF VFFN

Best Arabidopsis Sequence Match ( AT1G24090.1 )
(BLAST)

001: MNCLSHARSY IALGLLKRSS YVSSIPWNEC FFYMPSKSCL KPVAVSSVFG ICSVHSYSSR SKAVKSKMLS STVVSAVDKE KDAFFVVRKG DVIGIYKDLS
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA

Arabidopsis Description

RNase H domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7R5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.