Factsheet for GSMUA_Achr9P17780_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P16450_001	Banana	nucleus	29.94	50.27
Solyc04g005010.2.1	Tomato	nucleus	43.31	47.89
PGSC0003DMT400085909	Potato	cytosol	16.24	44.74
PGSC0003DMT400040239	Potato	nucleus	41.08	44.64
KRH18596	Soybean	nucleus	38.85	43.11
KRG93392	Soybean	nucleus	20.06	41.18
AT3G01410.1	Thale cress	nucleus	38.53	41.16
Solyc02g087130.2.1	Tomato	nucleus	36.94	40.28
Solyc01g008060.2.1	Tomato	nucleus	38.53	39.93
PGSC0003DMT400042267	Potato	nucleus	38.53	39.93
CDX74301	Canola	mitochondrion	22.93	39.56
Solyc02g087140.2.1	Tomato	cytosol	36.31	39.45
VIT_01s0026g00690.t01	Wine grape	mitochondrion	41.4	39.27
Zm00001d032798_P001	Maize	nucleus	36.31	39.04
Os10t0458700-02	Rice	nucleus, plasma membrane	39.81	38.7
KXG38410	Sorghum	cytosol	35.99	38.7
CDX91946	Canola	cytosol	23.89	38.66
KRG99252	Soybean	mitochondrion	43.31	38.64
CDY28678	Canola	nucleus	37.26	38.61
Bra040514.1-P	Field mustard	nucleus	37.26	38.61
PGSC0003DMT400004838	Potato	extracellular	44.9	38.52
KRH45746	Soybean	nucleus	43.63	38.48
CDX74299	Canola	cytosol	23.89	38.27
Solyc05g006090.2.1	Tomato	nucleus	43.31	37.06
CDY71303	Canola	nucleus	23.57	36.45
TraesCS1B01G161700.1	Wheat	cytosol	30.57	36.09
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	36.62	35.49
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	36.62	35.49
GSMUA_Achr9P16430_001	Banana	plasma membrane	20.06	34.81
AT1G24090.1	Thale cress	mitochondrion, plastid	38.85	34.56
AT5G51080.1	Thale cress	mitochondrion	34.08	33.23
CDY16247	Canola	cytosol, nucleus, plastid	37.9	30.67
CDY60797	Canola	golgi, nucleus, plastid	36.62	18.95
CDY16246	Canola	mitochondrion	11.46	16.67
Bra024633.1-P	Field mustard	cytosol, nucleus, plastid	24.84	13.07

Protein Annotations

MapMan:15.3.7.2.2	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518
GO:GO:0004523	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0090502	EnsemblPlantsGene:GSMUA_Achr9G17780_001	EnsemblPlants:GSMUA_Achr9P17780_001	EnsemblPlants:GSMUA_Achr9T17780_001	InterPro:IPR002156
InterPro:IPR036397	UniProt:M0U185	PFAM:PF13456	PFscan:PS50879	PANTHER:PTHR33033	PANTHER:PTHR33033:SF30
InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf	SUPFAM:SSF53098	UniParc:UPI0002953E58	SEG:seg

Description

retrotransposon protein, putative, unclassified [Source:GMGC_GENE;Acc:GSMUA_Achr9G17780_001]

Coordinates

chr9:+:12372089..12382104

Molecular Weight (calculated)

34139.7 Da

IEP (calculated)

6.623

GRAVY (calculated)

-0.264

Length

314 amino acids

Sequence
(BLAST)

001: MSSLSGWKAG TKLLRINFKS TGLYFRFFST GHARSSPSLN VNRQELIEEK GDALYDVRKG NHVGPYLSLS DCQSQISDPL VNGYQGYSLE KEAETYFASC
101: GLKNALYLLN AKDLKEDLFG ILVPCPFQEP TVAIPIADLP EKISVITDEP VKEHLKSEYS SQQKQPSDKS MSCTLEFDGA PAGKASKGGA GVILRTEDGS
201: VISRLREGLG AVTNDTADYR ALILGLRHAL KKGFKQIHVL GDSQLVCMQV QGLSKAKNKN LVDLCEEAKA LKEMFVSFSI SHIKKAMNSD AGSQAALAVD
301: LPVGEVHEES SETC

Best Arabidopsis Sequence Match ( AT3G01410.1 )
(BLAST)

001: MGSTMEDEKD AFYIVRKGDI IGVYRSLSEC QGQAGSSVSH PAMSVYKGYG WPKGAEDLLS SFGIKNALFS VNASHVKDDA FGKLIPCPVQ QPSSSQGESL
101: NKSSPSKRLQ DMGSGESGSF SPSPPQKQLK IENDMLRRIP SSLLTRTPIR QNDSCTIEFD GASKGNPGKA GAGAVLRASD NSVLFYLREG VGNATNNVAE
201: YRALLLGLRS ALDKGFKNVH VLGDSMLVCM QVQGAWKTNH PKMAELCKQA KELMNSFKTF DIKHIAREKN SEADKQANSA IFLADGQTQV ISGG

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JEB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.