CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G24090.1	Thale cress	mitochondrion, plastid	64.43	70.82
AT5G51080.1	Thale cress	mitochondrion	57.47	69.25
Solyc04g005010.2.1	Tomato	nucleus	37.37	51.06
CDY60797	Canola	golgi, nucleus, plastid	77.06	49.26
PGSC0003DMT400040239	Potato	nucleus	36.08	48.44
VIT_01s0026g00690.t01	Wine grape	mitochondrion	39.69	46.53
PGSC0003DMT400042267	Potato	nucleus	35.82	45.87
Solyc01g008060.2.1	Tomato	nucleus	35.57	45.54
Zm00001d049892_P001	Maize	mitochondrion	27.32	44.73
KRH45746	Soybean	nucleus	40.98	44.66
KRG99252	Soybean	mitochondrion	40.46	44.6
PGSC0003DMT400004838	Potato	extracellular	39.95	42.35
GSMUA_Achr9P16450_001	Banana	nucleus	20.36	42.25
KXG38410	Sorghum	cytosol	31.19	41.44
Solyc05g006090.2.1	Tomato	nucleus	39.18	41.42
TraesCS5A01G355500.1	Wheat	plastid	35.82	40.76
Zm00001d032798_P001	Maize	nucleus	30.67	40.75
TraesCS7D01G023200.1	Wheat	mitochondrion	36.34	40.4
CDY28678	Canola	nucleus	31.44	40.26
TraesCS7A01G025300.1	Wheat	mitochondrion	35.82	40.06
HORVU5Hr1G067140.3	Barley	nucleus	15.46	40.0
TraesCS4A01G463700.1	Wheat	plastid	35.57	39.77
Zm00001d035750_P001	Maize	plastid	30.67	39.27
Os08t0177800-00	Rice	mitochondrion	35.31	39.03
CDX74299	Canola	cytosol	19.59	38.78
GSMUA_Achr9P16430_001	Banana	plasma membrane	18.04	38.67
KXG21007	Sorghum	mitochondrion	33.51	38.35
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	31.7	37.96
GSMUA_Achr9P17780_001	Banana	mitochondrion	30.67	37.9
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	31.44	37.65
TraesCS1B01G161700.1	Wheat	cytosol	25.77	37.59
Os10t0458700-02	Rice	nucleus, plasma membrane	31.19	37.46
CDX91946	Canola	cytosol	18.56	37.11
CDX74301	Canola	mitochondrion	17.01	36.26
TraesCS5D01G363800.1	Wheat	golgi, mitochondrion	34.79	34.26
CDY71303	Canola	nucleus	17.53	33.5
Bra024633.1-P	Field mustard	cytosol, nucleus, plastid	47.16	30.65
CDY16246	Canola	mitochondrion	6.7	12.04

Protein Annotations

MapMan:15.3.7.2.2	Gene3D:3.30.420.10	Gene3D:3.40.970.10	GO:A0A078FTS9	UniProt:A0A078FTS9	EnsemblPlants:CDY16247
ProteinID:CDY16247	ProteinID:CDY16247.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518
GO:GO:0004523	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0090502	EnsemblPlantsGene:GSBRNA2T00090712001	InterPro:IPR002156	InterPro:IPR036397	InterPro:IPR037056
PFAM:PF01693	PFAM:PF13456	PFscan:PS50879	PANTHER:PTHR33033	PANTHER:PTHR33033:SF30	InterPro:RNaseH-like_sf
InterPro:RNaseH_domain	InterPro:RNaseH_sf	InterPro:RNase_H1_N	InterPro:RNase_H1_N_sf	InterPro:Ribosomal_L9/RNase_H1_N	SUPFAM:SSF53098
SUPFAM:SSF55658	UniParc:UPI0004EE19D3	SEG:seg	:	:	:

Description

BnaA09g29810DBnaA09g29810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FTS9]

Coordinates

chrLK032061:-:732079..735082

Molecular Weight (calculated)

42106.4 Da

IEP (calculated)

7.394

GRAVY (calculated)

-0.188

Length

388 amino acids

Sequence
(BLAST)

001: MEYSVFIESS RNSGGAINPE IHLVLLDNLC VCVCVGITTT TTVMNCLSHH ARSYISLGLL KRSSYVTSKI HPCFYMPSKP SLNPASVVSP LGLSRAHCYS
101: SRSKSAKSKM LTAVSAADKE KDAFFVVRKG DVIGIYKDLN DCQAQVGSSV FDPPVSVYKG YSLPKDAEEY LSSVGMKNPL YCFGASDLRE DMFGSLTPCL
201: FQEPSSSKVK VSEEEDTSEM KSKDMKPDIP SASTSSVFDQ LKPSSVTSDE TCFIEFDGAS KGNPGLSGAA AVLKTEDGSL ICKVRQGLGI ATNNAAEYHG
301: LILGLRHAIE RGYKKIKVKG DSKLICMQIK GKWKVNNEVL SKLHEEAKQL TNECISFEIS HVLRNLNSAA DEQANLAVRL PEGQVEVA

Best Arabidopsis Sequence Match ( AT1G24090.1 )
(BLAST)

001: MNCLSHARSY IALGLLKRSS YVSSIPWNEC FFYMPSKSCL KPVAVSSVFG ICSVHSYSSR SKAVKSKMLS STVVSAVDKE KDAFFVVRKG DVIGIYKDLS
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA

Arabidopsis Description

RNase H domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7R5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.