Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040514.1-P | Field mustard | nucleus | 99.67 | 99.67 |
| AT3G01410.1 | Thale cress | nucleus | 72.61 | 74.83 |
| CDX91946 | Canola | cytosol | 38.61 | 60.31 |
| CDX74301 | Canola | mitochondrion | 35.97 | 59.89 |
| CDX74299 | Canola | cytosol | 37.95 | 58.67 |
| CDY71303 | Canola | nucleus | 36.63 | 54.68 |
| PGSC0003DMT400085909 | Potato | cytosol | 19.8 | 52.63 |
| Solyc02g087140.2.1 | Tomato | cytosol | 48.84 | 51.21 |
| GSMUA_Achr9P16450_001 | Banana | nucleus | 31.35 | 50.8 |
| Solyc02g087130.2.1 | Tomato | nucleus | 47.85 | 50.35 |
| KRH18596 | Soybean | nucleus | 44.55 | 47.7 |
| HORVU5Hr1G067140.3 | Barley | nucleus | 23.43 | 47.33 |
| Zm00001d032798_P001 | Maize | nucleus | 41.58 | 43.15 |
| KXG38410 | Sorghum | cytosol | 41.58 | 43.15 |
| Zm00001d049892_P001 | Maize | mitochondrion | 33.33 | 42.62 |
| Os10t0458700-02 | Rice | nucleus, plasma membrane | 42.57 | 39.94 |
| TraesCS1A01G144300.2 | Wheat | cytosol, nucleus, plastid | 41.25 | 38.58 |
| TraesCS1D01G143400.1 | Wheat | cytosol, nucleus, plastid | 41.25 | 38.58 |
| TraesCS1B01G161700.1 | Wheat | cytosol | 33.66 | 38.35 |
| TraesCS7D01G023200.1 | Wheat | mitochondrion | 43.56 | 37.82 |
| TraesCS7A01G025300.1 | Wheat | mitochondrion | 43.23 | 37.75 |
| TraesCS4A01G463700.1 | Wheat | plastid | 42.9 | 37.46 |
| GSMUA_Achr9P17780_001 | Banana | mitochondrion | 38.61 | 37.26 |
| TraesCS5A01G355500.1 | Wheat | plastid | 41.25 | 36.66 |
| GSMUA_Achr9P16430_001 | Banana | plasma membrane | 21.78 | 36.46 |
| Os08t0177800-00 | Rice | mitochondrion | 41.91 | 36.18 |
| KXG21007 | Sorghum | mitochondrion | 39.27 | 35.1 |
| Zm00001d035750_P001 | Maize | plastid | 34.98 | 34.98 |
| TraesCS5D01G363800.1 | Wheat | golgi, mitochondrion | 41.91 | 32.23 |
| CDY16247 | Canola | cytosol, nucleus, plastid | 40.26 | 31.44 |
| CDY60797 | Canola | golgi, nucleus, plastid | 39.6 | 19.77 |
| CDY16246 | Canola | mitochondrion | 10.56 | 14.81 |
Protein Annotations
| MapMan:15.3.7.2.2 | Gene3D:3.30.420.10 | Gene3D:3.40.970.10 | GO:A0A078GVJ6 | UniProt:A0A078GVJ6 | EnsemblPlants:CDY28678 |
| ProteinID:CDY28678 | ProteinID:CDY28678.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004518 |
| GO:GO:0004523 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0090502 |
| EnsemblPlantsGene:GSBRNA2T00041305001 | InterPro:IPR002156 | InterPro:IPR036397 | InterPro:IPR037056 | PFAM:PF01693 | PFAM:PF13456 |
| PFscan:PS50879 | PANTHER:PTHR33033 | PANTHER:PTHR33033:SF30 | InterPro:RNaseH-like_sf | InterPro:RNaseH_domain | InterPro:RNaseH_sf |
| InterPro:RNase_H1_N | InterPro:RNase_H1_N_sf | InterPro:Ribosomal_L9/RNase_H1_N | SUPFAM:SSF53098 | SUPFAM:SSF55658 | UniParc:UPI0004EE930B |
| SEG:seg | : | : | : | : | : |
Description
BnaCnng05640DBnaCnng05640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVJ6]
Coordinates
chrLK032225:+:191475..193511
Molecular Weight (calculated)
32905.0 Da
IEP (calculated)
8.705
GRAVY (calculated)
-0.497
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSAMGGDEK DAFYVVRKGD IVGVYRSFSE CQQQASSSVS DPAMSVYKGY GWPQGAQDFI SSFGLKNALF SVNATHLKDD SVFGKLIPCP LQQPSSSSSQ
101: GDSLDKPSQP KRLLQQMETD ESPSSSHPQK HLKTENSSGG MVPRLAVPSS QLTRRPILQN DSCNIEFDGA SKGNPGKAGA GAVLRASHDN SVLFYLREGV
201: GTATNNVAEY RALLLGLKSA LHKGFKNVRV QGDSMLVCMQ VQDIWKTKHP KMAELCKQAK ELMKQFKSFH IQHIDREFNS VADAQANHAI NLPEGQTKEI
301: AGG
101: GDSLDKPSQP KRLLQQMETD ESPSSSHPQK HLKTENSSGG MVPRLAVPSS QLTRRPILQN DSCNIEFDGA SKGNPGKAGA GAVLRASHDN SVLFYLREGV
201: GTATNNVAEY RALLLGLKSA LHKGFKNVRV QGDSMLVCMQ VQDIWKTKHP KMAELCKQAK ELMKQFKSFH IQHIDREFNS VADAQANHAI NLPEGQTKEI
301: AGG
001: MGSTMEDEKD AFYIVRKGDI IGVYRSLSEC QGQAGSSVSH PAMSVYKGYG WPKGAEDLLS SFGIKNALFS VNASHVKDDA FGKLIPCPVQ QPSSSQGESL
101: NKSSPSKRLQ DMGSGESGSF SPSPPQKQLK IENDMLRRIP SSLLTRTPIR QNDSCTIEFD GASKGNPGKA GAGAVLRASD NSVLFYLREG VGNATNNVAE
201: YRALLLGLRS ALDKGFKNVH VLGDSMLVCM QVQGAWKTNH PKMAELCKQA KELMNSFKTF DIKHIAREKN SEADKQANSA IFLADGQTQV ISGG
101: NKSSPSKRLQ DMGSGESGSF SPSPPQKQLK IENDMLRRIP SSLLTRTPIR QNDSCTIEFD GASKGNPGKA GAGAVLRASD NSVLFYLREG VGNATNNVAE
201: YRALLLGLRS ALDKGFKNVH VLGDSMLVCM QVQGAWKTNH PKMAELCKQA KELMNSFKTF DIKHIAREKN SEADKQANSA IFLADGQTQV ISGG
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JEB4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.