Factsheet for TraesCS7A01G025300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G463700.1	Wheat	plastid	96.25	96.25
HORVU5Hr1G067140.3	Barley	nucleus	38.04	88.0
TraesCS5A01G355500.1	Wheat	plastid	75.79	77.13
Os08t0177800-00	Rice	mitochondrion	65.99	65.24
Zm00001d049892_P001	Maize	mitochondrion	43.52	63.71
KXG21007	Sorghum	mitochondrion	58.5	59.88
Zm00001d035750_P001	Maize	plastid	48.99	56.11
Solyc04g005010.2.1	Tomato	nucleus	42.36	51.76
PGSC0003DMT400040239	Potato	nucleus	40.92	49.13
PGSC0003DMT400085909	Potato	cytosol	16.14	49.12
Solyc02g087140.2.1	Tomato	cytosol	40.06	48.1
Solyc02g087130.2.1	Tomato	nucleus	39.77	47.92
KRG93392	Soybean	nucleus	21.04	47.71
Solyc01g008060.2.1	Tomato	nucleus	40.63	46.53
PGSC0003DMT400042267	Potato	nucleus	40.63	46.53
CDX74299	Canola	cytosol	25.94	45.92
CDX74301	Canola	mitochondrion	23.92	45.6
CDX91946	Canola	cytosol	25.36	45.36
KRH18596	Soybean	nucleus	36.89	45.23
VIT_01s0026g00690.t01	Wine grape	mitochondrion	42.65	44.71
AT3G01410.1	Thale cress	nucleus	36.89	43.54
CDY28678	Canola	nucleus	37.75	43.23
Bra040514.1-P	Field mustard	nucleus	37.75	43.23
PGSC0003DMT400004838	Potato	extracellular	45.53	43.17
KRG99252	Soybean	mitochondrion	43.52	42.9
KRH45746	Soybean	nucleus	43.8	42.7
CDY71303	Canola	nucleus	23.92	40.89
AT5G51080.1	Thale cress	mitochondrion	37.75	40.68
Solyc05g006090.2.1	Tomato	nucleus	42.94	40.6
AT1G24090.1	Thale cress	mitochondrion, plastid	41.21	40.51
GSMUA_Achr9P16430_001	Banana	plasma membrane	21.04	40.33
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	34.58	37.04
CDY16247	Canola	cytosol, nucleus, plastid	40.06	35.82
CDY60797	Canola	golgi, nucleus, plastid	38.9	22.24
CDY16246	Canola	mitochondrion	10.95	17.59
Bra024633.1-P	Field mustard	cytosol, nucleus, plastid	27.95	16.25

Protein Annotations

MapMan:15.3.7.2.2	Gene3D:3.30.420.10	Gene3D:3.40.970.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0004523	GO:GO:0005488	GO:GO:0016787	InterPro:IPR002156	InterPro:IPR036397
InterPro:IPR037056	PFAM:PF01693	PFAM:PF13456	PFscan:PS50879	PANTHER:PTHR33033	PANTHER:PTHR33033:SF30
InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf	InterPro:RNase_H1_N	InterPro:RNase_H1_N_sf	InterPro:Ribosomal_L9/RNase_H1_N
SUPFAM:SSF53098	SUPFAM:SSF55658	EnsemblPlantsGene:TraesCS7A01G025300	EnsemblPlants:TraesCS7A01G025300.1	TIGR:cd09279	SEG:seg

Description

No Description!

Coordinates

chr7A:-:10039742..10044228

Molecular Weight (calculated)

37947.1 Da

IEP (calculated)

8.936

GRAVY (calculated)

-0.444

Length

347 amino acids

Sequence
(BLAST)

001: MRSCYSSSSL CGISRAAWRH AVAGTLTLSG IRHQHQHGLR YLPLRPPVPP IALGLAERFF SSSSPKRSTK RSAAKKATPP PMDSAGGDPF YVIRKGDVIG
101: IYKNLADCQA QVSNSVCDPS VTVYKGYSLR KDTEEYLAAR GLKNALYSIN AADARDELFD DLAPCPFQQP DGTSTLKRPQ ETETGPSKKH PKVAEQEPLP
201: DSHLSCILEF DGACKGNPGK SGAGVVVRRS DGSVIAQLRE GLGIATNNAA EYRALLLGLR YAAKKGFKYV RAQGDSKLVC NQVQDLWRVR NDNMADLCKK
301: VKELKGNFLE FQINHVLREF NSDADAQANF AVELPVGEIQ EQSNFTC

Best Arabidopsis Sequence Match ( AT1G24090.1 )
(BLAST)

001: MNCLSHARSY IALGLLKRSS YVSSIPWNEC FFYMPSKSCL KPVAVSSVFG ICSVHSYSSR SKAVKSKMLS STVVSAVDKE KDAFFVVRKG DVIGIYKDLS
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA

Arabidopsis Description

RNase H domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7R5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.