Factsheet for PGSC0003DMT400042267

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
peroxisome 1
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g008060.2.1	Tomato	nucleus	98.68	98.68
PGSC0003DMT400040239	Potato	nucleus	76.24	79.93
PGSC0003DMT400004838	Potato	extracellular	72.94	60.38
PGSC0003DMT400085909	Potato	cytosol	21.12	56.14
VIT_01s0026g00690.t01	Wine grape	mitochondrion	55.78	51.06
KRG99252	Soybean	mitochondrion	57.43	49.43
KRH45746	Soybean	nucleus	57.76	49.16
GSMUA_Achr9P16450_001	Banana	nucleus	28.71	46.52
Zm00001d049892_P001	Maize	mitochondrion	35.64	45.57
Zm00001d032798_P001	Maize	nucleus	43.89	45.55
KXG38410	Sorghum	cytosol	43.89	45.55
HORVU5Hr1G067140.3	Barley	nucleus	22.11	44.67
AT5G51080.1	Thale cress	mitochondrion	46.2	43.48
AT1G24090.1	Thale cress	mitochondrion, plastid	49.17	42.21
Os10t0458700-02	Rice	nucleus, plasma membrane	43.89	41.18
TraesCS1B01G161700.1	Wheat	cytosol	35.97	40.98
TraesCS4A01G463700.1	Wheat	plastid	46.86	40.92
TraesCS7D01G023200.1	Wheat	mitochondrion	46.86	40.69
TraesCS7A01G025300.1	Wheat	mitochondrion	46.53	40.63
TraesCS5A01G355500.1	Wheat	plastid	44.88	39.88
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	42.57	39.81
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	42.57	39.81
KXG21007	Sorghum	mitochondrion	43.89	39.23
GSMUA_Achr9P16430_001	Banana	plasma membrane	23.1	38.67
GSMUA_Achr9P17780_001	Banana	mitochondrion	39.93	38.53
Zm00001d035750_P001	Maize	plastid	37.95	37.95
Os08t0177800-00	Rice	mitochondrion	43.89	37.89
CDY16247	Canola	cytosol, nucleus, plastid	45.87	35.82
TraesCS5D01G363800.1	Wheat	golgi, mitochondrion	43.89	33.76
CDY60797	Canola	golgi, nucleus, plastid	44.22	22.08
Bra024633.1-P	Field mustard	cytosol, nucleus, plastid	28.05	14.24

Protein Annotations

EntrezGene:102598621	MapMan:15.3.7.2.2	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0004523	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0090502	InterPro:IPR002156	InterPro:IPR036397	UniProt:M1BCS8
PFAM:PF13456	EnsemblPlantsGene:PGSC0003DMG402016404	PGSC:PGSC0003DMG402016404	EnsemblPlants:PGSC0003DMT400042267	PFscan:PS50879	PANTHER:PTHR33033
PANTHER:PTHR33033:SF30	InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf	SUPFAM:SSF53098	UniParc:UPI000294FEBE
RefSeq:XP_006348527.1	RefSeq:XP_006348528.1	SEG:seg	:	:	:

Description

RNase H domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG402016404]

Coordinates

chr1:+:3714757..3723678

Molecular Weight (calculated)

33173.3 Da

IEP (calculated)

7.730

GRAVY (calculated)

-0.441

Length

303 amino acids

Sequence
(BLAST)

001: MKEERDGFFV VKKGDIVGVY RNLGDCQTQV GSSICDPPVS VYKGYSMPKD TEEYLLSCGL KNALYSIRAA DLTESLFGAL VPCPFQHQSS SKGGASEHTP
101: KKRSQEAMWS EYADAVGSAV TSNDSLRKHI KLEPPKGDQQ ALSSSVYAVG MKEADRGYPQ QRSCTLEFDG TSKGNPGQAG AGAVVRADDG SLICRLREGL
201: GIATTSVAEY RGFILGLKYA HSKGFTSIRA QGDSKLVCMQ IQGLWKVKNQ NISTLFQQAK QLKDRFFSFR IIHVLRESNC DADQQANLAI ELPDGHVQEE
301: IEK

Best Arabidopsis Sequence Match ( AT1G24090.1 )
(BLAST)

001: MNCLSHARSY IALGLLKRSS YVSSIPWNEC FFYMPSKSCL KPVAVSSVFG ICSVHSYSSR SKAVKSKMLS STVVSAVDKE KDAFFVVRKG DVIGIYKDLS
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA

Arabidopsis Description

RNase H domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7R5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.