Factsheet for PGSC0003DMT400040239

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042267	Potato	nucleus	79.93	76.24
Solyc05g006090.2.1	Tomato	nucleus	95.85	75.48
PGSC0003DMT400004838	Potato	extracellular	77.85	61.48
PGSC0003DMT400085909	Potato	cytosol	21.8	55.26
VIT_01s0026g00690.t01	Wine grape	mitochondrion	60.55	52.87
GSMUA_Achr9P16450_001	Banana	nucleus	31.83	49.2
KRH45746	Soybean	nucleus	60.21	48.88
KRG99252	Soybean	mitochondrion	59.17	48.58
Zm00001d049892_P001	Maize	mitochondrion	38.06	46.41
KXG38410	Sorghum	cytosol	45.33	44.86
Zm00001d032798_P001	Maize	nucleus	45.33	44.86
HORVU5Hr1G067140.3	Barley	nucleus	22.49	43.33
AT5G51080.1	Thale cress	mitochondrion	47.4	42.55
AT1G24090.1	Thale cress	mitochondrion, plastid	50.52	41.36
KXG21007	Sorghum	mitochondrion	48.44	41.3
GSMUA_Achr9P17780_001	Banana	mitochondrion	44.64	41.08
TraesCS1B01G161700.1	Wheat	cytosol	37.72	40.98
TraesCS4A01G463700.1	Wheat	plastid	49.13	40.92
TraesCS7A01G025300.1	Wheat	mitochondrion	49.13	40.92
TraesCS7D01G023200.1	Wheat	mitochondrion	49.13	40.69
Os10t0458700-02	Rice	nucleus, plasma membrane	44.98	40.25
TraesCS5A01G355500.1	Wheat	plastid	47.4	40.18
Zm00001d035750_P001	Maize	plastid	41.52	39.6
Os08t0177800-00	Rice	mitochondrion	47.4	39.03
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	43.6	38.89
GSMUA_Achr9P16430_001	Banana	plasma membrane	24.22	38.67
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	43.25	38.58
CDY16247	Canola	cytosol, nucleus, plastid	48.44	36.08
TraesCS5D01G363800.1	Wheat	golgi, mitochondrion	47.4	34.77
CDY60797	Canola	golgi, nucleus, plastid	46.37	22.08
Bra024633.1-P	Field mustard	cytosol, nucleus, plastid	30.1	14.57

Protein Annotations

EntrezGene:102591820	MapMan:15.3.7.2.2	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0004523	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0090502	InterPro:IPR002156	InterPro:IPR036397	UniProt:M1B9K9
PFAM:PF13456	EnsemblPlantsGene:PGSC0003DMG400015576	PGSC:PGSC0003DMG400015576	EnsemblPlants:PGSC0003DMT400040239	PFscan:PS50879	PANTHER:PTHR33033
PANTHER:PTHR33033:SF30	InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf	InterPro:Ribosomal_L9/RNase_H1_N	SUPFAM:SSF53098
SUPFAM:SSF55658	UniParc:UPI000294FA00	RefSeq:XP_015168074.1	:	:	:

Description

Nuclease [Source:PGSC_GENE;Acc:PGSC0003DMG400015576]

Coordinates

chr5:-:7223805..7232374

Molecular Weight (calculated)

31709.6 Da

IEP (calculated)

7.008

GRAVY (calculated)

-0.407

Length

289 amino acids

Sequence
(BLAST)

001: MKEERDGFFV VRKGDLVGVY KNLSDCQTQV GSSICDPPVS VYKGYAMPKD TEEYLLSCGL KNALYSIRAA DLTEDLFGTL VPCPFQQPSS SKSGTSDHLP
101: KKRPQEAVWS EYADAVGSTV VSNDSARKHV KLEQQKGDQV LALPSGQRSC TLEFDGASKG NPGQAGAGAV IRADDGSMTL RLREGLGVAT SNHAEYRAFI
201: LGLKHALREG FTSIRVQGDS KLVCMQIQGL WKVKNQNIAV VFEQAKQLKE RFLSFRIIHV LRESNSDADQ QANLAVELPE GQIQEELQK

Best Arabidopsis Sequence Match ( AT1G24090.1 )
(BLAST)

001: MNCLSHARSY IALGLLKRSS YVSSIPWNEC FFYMPSKSCL KPVAVSSVFG ICSVHSYSSR SKAVKSKMLS STVVSAVDKE KDAFFVVRKG DVIGIYKDLS
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA

Arabidopsis Description

RNase H domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7R5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.