Factsheet for Os08t0177800-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G025300.1	Wheat	mitochondrion	65.24	65.99
TraesCS4A01G463700.1	Wheat	plastid	65.24	65.99
Zm00001d049892_P001	Maize	mitochondrion	44.44	65.82
TraesCS7D01G023200.1	Wheat	mitochondrion	64.96	65.33
TraesCS5A01G355500.1	Wheat	plastid	61.82	63.64
HORVU5Hr1G067140.3	Barley	nucleus	27.07	63.33
KXG21007	Sorghum	mitochondrion	60.11	62.24
Zm00001d035750_P001	Maize	plastid	49.57	57.43
TraesCS5D01G363800.1	Wheat	golgi, mitochondrion	62.11	55.33
PGSC0003DMT400085909	Potato	cytosol	17.09	52.63
KRG93392	Soybean	nucleus	21.37	49.02
Solyc04g005010.2.1	Tomato	nucleus	39.03	48.24
PGSC0003DMT400040239	Potato	nucleus	39.03	47.4
Solyc02g087140.2.1	Tomato	cytosol	38.75	47.06
Solyc02g087130.2.1	Tomato	nucleus	38.18	46.53
CDX74301	Canola	mitochondrion	23.65	45.6
CDX74299	Canola	cytosol	25.36	45.41
VIT_01s0026g00690.t01	Wine grape	mitochondrion	42.73	45.32
KRH18596	Soybean	nucleus	36.47	45.23
CDX91946	Canola	cytosol	24.79	44.85
Solyc01g008060.2.1	Tomato	nucleus	37.89	43.89
PGSC0003DMT400042267	Potato	nucleus	37.89	43.89
GSMUA_Achr9P16430_001	Banana	plasma membrane	22.51	43.65
Bra040514.1-P	Field mustard	nucleus	36.18	41.91
CDY28678	Canola	nucleus	36.18	41.91
AT3G01410.1	Thale cress	nucleus	34.76	41.5
KRH45746	Soybean	nucleus	41.88	41.29
KRG99252	Soybean	mitochondrion	41.31	41.19
AT1G24090.1	Thale cress	mitochondrion, plastid	41.03	40.79
PGSC0003DMT400004838	Potato	extracellular	42.17	40.44
CDY71303	Canola	nucleus	23.08	39.9
AT5G51080.1	Thale cress	mitochondrion	36.47	39.75
Solyc05g006090.2.1	Tomato	nucleus	41.03	39.24
Os10t0458700-02	Rice	nucleus, plasma membrane	35.9	39.01
CDY16247	Canola	cytosol, nucleus, plastid	39.03	35.31
CDY60797	Canola	golgi, nucleus, plastid	37.61	21.75
CDY16246	Canola	mitochondrion	10.83	17.59
Bra024633.1-P	Field mustard	cytosol, nucleus, plastid	28.77	16.92

Protein Annotations

MapMan:15.3.7.2.2	Gene3D:3.30.420.10	Gene3D:3.40.970.10	ProteinID:BAD03047.1	ProteinID:BAD03243.1	ProteinID:BAT04084.1
ProteinID:EAZ41710.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004523
GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0090502	InterPro:IPR002156	InterPro:IPR036397	InterPro:IPR037056	EnsemblPlantsGene:Os08g0177800	EnsemblPlants:Os08t0177800-00
PFAM:PF01693	PFAM:PF13456	PFscan:PS50879	PANTHER:PTHR33033	PANTHER:PTHR33033:SF30	UniProt:Q6ZBS0
InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf	InterPro:RNase_H1_N	InterPro:RNase_H1_N_sf	InterPro:Ribosomal_L9/RNase_H1_N
SUPFAM:SSF53098	SUPFAM:SSF55658	UniParc:UPI0000225FCA	SEG:seg	:	:

Description

Similar to RNase H domain-containing protein. (Os08t0177800-00)

Coordinates

chr8:-:4566815..4569933

Molecular Weight (calculated)

38231.6 Da

IEP (calculated)

9.508

GRAVY (calculated)

-0.401

Length

351 amino acids

Sequence
(BLAST)

001: MRSCASSLCG ISRVAWRRHA VAGGALSQHH HHQQRHLVLR PPAPPPIGLA LERFFSASSR RSAKRSAAAA KQSSQPPPPP SMDGGEPFYV VRKGDVIGIY
101: KSLSDCQAQV SNSVCDPSVT VYKGYSLRKE TEEYLAARGL RNPLYSINAA DARDELFDDL VPCPFQQPDG TGTSTLKRPL EMETGPSKKQ PKVSEQEPLP
201: NSSLSCLLEF DGASKGNPGK AGAGAVIRRL DGTVIAQLRE GLGIATNNAA EYRALILGLT YAAKKGFKYI RAQGDSKLVC NQVSDVWRAR HDTMADLCKR
301: VKEIKGRFHT FQINHVLREF NTDADAQANL AVELPGEKLL SEFTLHAVTV T

Best Arabidopsis Sequence Match ( AT1G24090.1 )
(BLAST)

001: MNCLSHARSY IALGLLKRSS YVSSIPWNEC FFYMPSKSCL KPVAVSSVFG ICSVHSYSSR SKAVKSKMLS STVVSAVDKE KDAFFVVRKG DVIGIYKDLS
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA

Arabidopsis Description

RNase H domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7R5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.