CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, nucleus

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, nucleus, plastid
Any Predictor:	golgi, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16247	Canola	cytosol, nucleus, plastid	49.26	77.06
AT5G51080.1	Thale cress	mitochondrion	36.08	68.01
AT1G24090.1	Thale cress	mitochondrion, plastid	39.37	67.71
Bra024633.1-P	Field mustard	cytosol, nucleus, plastid	50.08	50.92
Solyc04g005010.2.1	Tomato	nucleus	23.23	49.65
PGSC0003DMT400040239	Potato	nucleus	22.08	46.37
VIT_01s0026g00690.t01	Wine grape	mitochondrion	25.21	46.22
PGSC0003DMT400042267	Potato	nucleus	22.08	44.22
Solyc01g008060.2.1	Tomato	nucleus	21.91	43.89
Zm00001d049892_P001	Maize	mitochondrion	17.13	43.88
KRH45746	Soybean	nucleus	25.21	42.98
KRG99252	Soybean	mitochondrion	24.55	42.33
GSMUA_Achr9P16450_001	Banana	nucleus	13.01	42.25
PGSC0003DMT400004838	Potato	extracellular	24.55	40.71
KXG38410	Sorghum	cytosol	19.28	40.07
Solyc05g006090.2.1	Tomato	nucleus	24.05	39.78
Zm00001d032798_P001	Maize	nucleus	19.11	39.73
CDY28678	Canola	nucleus	19.77	39.6
TraesCS5A01G355500.1	Wheat	plastid	22.24	39.59
TraesCS4A01G463700.1	Wheat	plastid	22.57	39.48
CDX74299	Canola	cytosol	12.69	39.29
TraesCS7A01G025300.1	Wheat	mitochondrion	22.24	38.9
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	20.76	38.89
Os10t0458700-02	Rice	nucleus, plasma membrane	20.59	38.7
HORVU5Hr1G067140.3	Barley	nucleus	9.56	38.67
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	20.59	38.58
TraesCS7D01G023200.1	Wheat	mitochondrion	22.08	38.4
TraesCS1B01G161700.1	Wheat	cytosol	16.64	37.97
CDX91946	Canola	cytosol	12.03	37.63
Os08t0177800-00	Rice	mitochondrion	21.75	37.61
GSMUA_Achr9P16430_001	Banana	plasma membrane	11.2	37.57
KXG21007	Sorghum	mitochondrion	20.76	37.17
Zm00001d035750_P001	Maize	plastid	18.45	36.96
CDX74301	Canola	mitochondrion	11.04	36.81
GSMUA_Achr9P17780_001	Banana	mitochondrion	18.95	36.62
CDY71303	Canola	nucleus	11.37	33.99
TraesCS5D01G363800.1	Wheat	golgi, mitochondrion	21.91	33.76
CDY16246	Canola	mitochondrion	4.61	12.96

Protein Annotations

MapMan:15.3.7.2.2	Gene3D:3.30.420.10	GO:A0A078J411	UniProt:A0A078J411	EnsemblPlants:CDY60797	ProteinID:CDY60797
ProteinID:CDY60797.1	InterPro:DUF393	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518
GO:GO:0004523	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0090502	EnsemblPlantsGene:GSBRNA2T00030087001	InterPro:IPR002156	InterPro:IPR036397	PFAM:PF04134
PFAM:PF13456	PFscan:PS50879	PANTHER:PTHR33033	PANTHER:PTHR33033:SF30	InterPro:RNaseH-like_sf	InterPro:RNaseH_domain
InterPro:RNaseH_sf	SUPFAM:SSF53098	UniParc:UPI0004EEBD0E	:	:	:

Description

BnaC05g50790DBnaC05g50790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J411]

Coordinates

chrLK033916:-:16956..21313

Molecular Weight (calculated)

67171.0 Da

IEP (calculated)

8.528

GRAVY (calculated)

-0.188

Length

607 amino acids

Sequence
(BLAST)

001: MIILDYQTIN SSFSARGEQL IQPEIHLVLL ALVGQSVSLL IHLSYRYLRL RSTVMNCLSH HARSYISLGL LKISSYVTSK IPPWNQCFYM PSKPCLNPAS
101: VVSPLGLSRA HCYSSRSKSG KSKMLTAEKE KDAFFVVRKG DVIGIYKDLN DCQAQLGSSV FDPPVSVYKG YSLPKDSEDY LSSVGMKNPL YCFGASDLRE
201: DMFGSLTPCL FQEPTSSKVK VSEEEDTSEL KSKDMKHDMP SASVFDQQLK PSAVTSDETC FIEFDGASKG NPGLSGAAAV LKTEDGSLIC KVRQGLGIAT
301: NNAAEYHGLI LGLKHAIERG YKKIKVKGDS KLICMQIKGK WKVNNEVLSK LHEEAKQLTN ECISFEISHV LRNLNSAADE QANLAVRLPG NVERISRMLT
401: KALRILKPRS IPGPVYSSSP SPRLTPGAVS RTTAGAAEID ADDAVAYSDP TESPTAMPIT MQVHLQPRVV VYDGVCHLCH GGVKWIIKAD KYRKIKFCCL
501: QSKSAEPYLT VSGVTKEDVQ KRFLFIEGLG SYHQASTAAL RVVSYLPLPY SALKAFAIVP TPLRDSVYDY VANNRYNWFG KAEDCLVLKE KELLERFIDR
601: DELIDRC

Best Arabidopsis Sequence Match ( AT1G24090.1 )
(BLAST)

001: MNCLSHARSY IALGLLKRSS YVSSIPWNEC FFYMPSKSCL KPVAVSSVFG ICSVHSYSSR SKAVKSKMLS STVVSAVDKE KDAFFVVRKG DVIGIYKDLS
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA

Arabidopsis Description

RNase H domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7R5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.