CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035750_P001	Maize	plastid	61.36	68.65
Os08t0177800-00	Rice	mitochondrion	62.24	60.11
HORVU5Hr1G067140.3	Barley	nucleus	26.25	59.33
TraesCS7A01G025300.1	Wheat	mitochondrion	59.88	58.5
TraesCS5A01G355500.1	Wheat	plastid	58.11	57.77
TraesCS4A01G463700.1	Wheat	plastid	59.0	57.64
TraesCS7D01G023200.1	Wheat	mitochondrion	59.0	57.31
PGSC0003DMT400085909	Potato	cytosol	17.11	50.88
TraesCS5D01G363800.1	Wheat	golgi, mitochondrion	58.41	50.25
Solyc04g005010.2.1	Tomato	nucleus	41.59	49.65
PGSC0003DMT400040239	Potato	nucleus	41.3	48.44
KRG93392	Soybean	nucleus	21.83	48.37
Solyc02g087130.2.1	Tomato	nucleus	39.53	46.53
Solyc02g087140.2.1	Tomato	cytosol	39.53	46.37
KRH18596	Soybean	nucleus	38.64	46.29
VIT_01s0026g00690.t01	Wine grape	mitochondrion	43.95	45.02
CDX74299	Canola	cytosol	25.66	44.39
Solyc01g008060.2.1	Tomato	nucleus	39.23	43.89
PGSC0003DMT400042267	Potato	nucleus	39.23	43.89
CDX91946	Canola	cytosol	25.07	43.81
KRG99252	Soybean	mitochondrion	44.54	42.9
CDX74301	Canola	mitochondrion	23.01	42.86
KRH45746	Soybean	nucleus	44.25	42.13
KXG38410	Sorghum	cytosol	36.28	42.12
AT3G01410.1	Thale cress	nucleus	35.69	41.16
GSMUA_Achr9P16430_001	Banana	plasma membrane	21.83	40.88
AT5G51080.1	Thale cress	mitochondrion	38.64	40.68
AT1G24090.1	Thale cress	mitochondrion, plastid	41.3	39.66
PGSC0003DMT400004838	Potato	extracellular	42.77	39.62
CDY28678	Canola	nucleus	35.1	39.27
Bra040514.1-P	Field mustard	nucleus	35.1	39.27
Solyc05g006090.2.1	Tomato	nucleus	41.59	38.42
CDY71303	Canola	nucleus	22.71	37.93
CDY16247	Canola	cytosol, nucleus, plastid	38.35	33.51
CDY60797	Canola	golgi, nucleus, plastid	37.17	20.76
CDY16246	Canola	mitochondrion	11.21	17.59
Bra024633.1-P	Field mustard	cytosol, nucleus, plastid	25.96	14.74

Protein Annotations

MapMan:15.3.7.2.2	Gene3D:3.30.420.10	UniProt:A0A1B6P5M0	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0004523	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0090502	InterPro:IPR002156	InterPro:IPR036397	EnsemblPlants:KXG21007
ProteinID:KXG21007	ProteinID:KXG21007.1	PFAM:PF13456	PFscan:PS50879	PANTHER:PTHR33033	PANTHER:PTHR33033:SF30
InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf	InterPro:Ribosomal_L9/RNase_H1_N	EnsemblPlantsGene:SORBI_3009G002900	SUPFAM:SSF53098
SUPFAM:SSF55658	UniParc:UPI00081ACA07	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:228046..231444

Molecular Weight (calculated)

37360.9 Da

IEP (calculated)

8.287

GRAVY (calculated)

-0.222

Length

339 amino acids

Sequence
(BLAST)

001: MVFWSCSSCL RGFIPRAAWM RHYTLLSPRP TASLPIHHFS SSARRSTKKS AVKAPMHSSI LAAKAPMEKS AAKVPMYSSR EPFYVIRKGD VIGICKTLSD
101: CQAQVSNSVC DPPVTVYKGY SLRKETEEYL AARGLRNAVY SIDAADARDE LFGDLVPCPF QQPDEAKQST LKMSQGMETR LSEHPKAADL ETLPDSELSC
201: ILEFDGACKG NPGKSGAGVI IRRLDGSVIA LLREGLGIMT NNAAEYRALI LGLNYASKKG FKYIRCQGDS KLVCNQVRGD WRARSDNMAV LCDIAKELKE
301: TFLTFQINHV LREFNSDADV QANFGAQLAV DEVQELSVC

Best Arabidopsis Sequence Match ( AT1G24090.1 )
(BLAST)

001: MNCLSHARSY IALGLLKRSS YVSSIPWNEC FFYMPSKSCL KPVAVSSVFG ICSVHSYSSR SKAVKSKMLS STVVSAVDKE KDAFFVVRKG DVIGIYKDLS
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA

Arabidopsis Description

RNase H domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7R5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.