Factsheet for Bra024633.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60797	Canola	golgi, nucleus, plastid	50.92	50.08
CDY16247	Canola	cytosol, nucleus, plastid	30.65	47.16
AT5G51080.1	Thale cress	mitochondrion	22.45	41.61
AT1G24090.1	Thale cress	mitochondrion, plastid	23.79	40.23
HORVU5Hr1G067140.3	Barley	nucleus	8.88	35.33
GSMUA_Achr9P16450_001	Banana	nucleus	10.89	34.76
Zm00001d049892_P001	Maize	mitochondrion	12.56	31.65
Solyc04g005010.2.1	Tomato	nucleus	14.74	30.99
VIT_01s0026g00690.t01	Wine grape	mitochondrion	17.09	30.82
KXG38410	Sorghum	cytosol	14.74	30.14
PGSC0003DMT400040239	Potato	nucleus	14.57	30.1
TraesCS5A01G355500.1	Wheat	plastid	16.92	29.62
KRH45746	Soybean	nucleus	17.59	29.49
Zm00001d032798_P001	Maize	nucleus	14.41	29.45
KRG99252	Soybean	mitochondrion	17.09	28.98
Os08t0177800-00	Rice	mitochondrion	16.92	28.77
Zm00001d035750_P001	Maize	plastid	14.57	28.71
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	15.24	28.09
TraesCS7D01G023200.1	Wheat	mitochondrion	16.42	28.08
PGSC0003DMT400042267	Potato	nucleus	14.24	28.05
TraesCS7A01G025300.1	Wheat	mitochondrion	16.25	27.95
TraesCS4A01G463700.1	Wheat	plastid	16.25	27.95
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	15.08	27.78
Solyc01g008060.2.1	Tomato	nucleus	14.07	27.72
Bra040514.1-P	Field mustard	nucleus	14.07	27.72
Os10t0458700-02	Rice	nucleus, plasma membrane	14.91	27.55
TraesCS1B01G161700.1	Wheat	cytosol	11.89	26.69
PGSC0003DMT400004838	Potato	extracellular	16.25	26.5
Solyc05g006090.2.1	Tomato	nucleus	16.25	26.43
GSMUA_Achr9P16430_001	Banana	plasma membrane	7.87	25.97
KXG21007	Sorghum	mitochondrion	14.74	25.96
TraesCS5D01G363800.1	Wheat	golgi, mitochondrion	16.42	24.87
GSMUA_Achr9P17780_001	Banana	mitochondrion	13.07	24.84

Protein Annotations

MapMan:15.3.7.2.2	Gene3D:3.30.420.10	InterPro:Anticodon-binding_dom	EnsemblPlantsGene:Bra024633	EnsemblPlants:Bra024633.1	EnsemblPlants:Bra024633.1-P
InterPro:DUF393	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004523
GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0090502	InterPro:IPR002156	InterPro:IPR036397	UniProt:M4E778	PFAM:PF04134	PFAM:PF09793
PFAM:PF13456	PFscan:PS50879	PANTHER:PTHR33033	PANTHER:PTHR33033:SF30	InterPro:RNaseH-like_sf	InterPro:RNaseH_domain
InterPro:RNaseH_sf	SMART:SM00995	SUPFAM:SSF53098	UniParc:UPI000254219D	SEG:seg	:

Description

AT1G24090 (E=9e-134) | RNase H domain-containing protein

Coordinates

chrA09:-:23901459..23907488

Molecular Weight (calculated)

65092.4 Da

IEP (calculated)

8.680

GRAVY (calculated)

-0.162

Length

597 amino acids

Sequence
(BLAST)

001: MVNASFITGL SYLGKTEDPL LTDNCCVNLD SLRAKEALAI RQAEAEAERL GVGVTAEAQS IFDSLSKTLP VQWENSDILV MKEVRVRSPY LSDCVFGGTD
101: AANNRVKKVK SVCVCVGITT TTTVMNCLSH HARSYISLGL LKRSSYVTSK IHPCFYMPSK LCLNPASVVS PLGLSRAHCY SSRSKSAKSK MLTAVSAADK
201: EKDAFFVVRK GDVIGIYKDL NDCQAQVGSS EPASSKVKVS EEEDTSEMKS KDMKPDIPSA STSSVFDQLK PSSVTSDETC FIEFDGASKG NPGLSGAAAV
301: LKTEDGSLIC KVRQGLGIAT NNAAEYHGLI LGLRHAIERG YKKIKVKGDS KLICMQNLNS AADEQANLAV RLPGNVKRIS RMLTKALRIL KPRSILGGSL
401: HRRPVYSSSP SPRLTPGAVS RTTAGAAEID ADDAVAYSDP TESPTAMPIM MQAHLQPRVV VYDGVCPLCH GGVKWIIKAD KYRKIKFCCL QSKTAEPYLT
501: VSGVTKEDVE KRFLFIEGLG SYHQASTAAL RVVSYLPLPY SALKAFTIVP TPLRDSVYDY VANNRYNWFG KAEDCLVLKE KELLERFIDR DELIDRC

Best Arabidopsis Sequence Match ( AT1G24095.1 )
(BLAST)

001: MLTRALRILK PRLFLGSLLQ RRSVCFSAPS PAFSTGAISR TTAEIDADEV TACLDPAESV TKIPVIMPGN LQPRVVVYDG VCHLCHGGVK WIIKADKYRK
101: IKFCCLQSKA AEPYLEVSGV TREDVQKRFL FIEGLGFYHQ ASTAALRVVS YLPLPYSALN AFSIVPTPLR DSVYDYVAKN RYDWFGKAED CLVLNDKELL
201: ERFIDRDELI NRS

Arabidopsis Description

Putative thiol-disulfide oxidoreductase DCC [Source:UniProtKB/TrEMBL;Acc:Q9LR85]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.