Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG21007 | Sorghum | mitochondrion | 68.65 | 61.36 |
| Zm00001d049892_P001 | Maize | mitochondrion | 44.88 | 57.38 |
| HORVU5Hr1G067140.3 | Barley | nucleus | 26.73 | 54.0 |
| Os08t0177800-00 | Rice | mitochondrion | 57.43 | 49.57 |
| TraesCS7A01G025300.1 | Wheat | mitochondrion | 56.11 | 48.99 |
| TraesCS4A01G463700.1 | Wheat | plastid | 55.45 | 48.41 |
| TraesCS7D01G023200.1 | Wheat | mitochondrion | 54.79 | 47.56 |
| PGSC0003DMT400085909 | Potato | cytosol | 17.49 | 46.49 |
| KRG93392 | Soybean | nucleus | 23.43 | 46.41 |
| TraesCS5A01G355500.1 | Wheat | plastid | 52.15 | 46.33 |
| Solyc04g005010.2.1 | Tomato | nucleus | 40.59 | 43.31 |
| TraesCS5D01G363800.1 | Wheat | golgi, mitochondrion | 54.79 | 42.13 |
| PGSC0003DMT400040239 | Potato | nucleus | 39.6 | 41.52 |
| Solyc02g087140.2.1 | Tomato | cytosol | 38.28 | 40.14 |
| Solyc02g087130.2.1 | Tomato | nucleus | 37.29 | 39.24 |
| KRH18596 | Soybean | nucleus | 35.97 | 38.52 |
| PGSC0003DMT400042267 | Potato | nucleus | 37.95 | 37.95 |
| Solyc01g008060.2.1 | Tomato | nucleus | 37.95 | 37.95 |
| AT3G01410.1 | Thale cress | nucleus | 35.64 | 36.73 |
| VIT_01s0026g00690.t01 | Wine grape | mitochondrion | 39.6 | 36.25 |
| Zm00001d032798_P001 | Maize | nucleus | 34.65 | 35.96 |
| KRH45746 | Soybean | nucleus | 41.91 | 35.67 |
| AT5G51080.1 | Thale cress | mitochondrion | 37.62 | 35.4 |
| GSMUA_Achr9P16430_001 | Banana | plasma membrane | 21.12 | 35.36 |
| KRG99252 | Soybean | mitochondrion | 40.92 | 35.23 |
| Bra040514.1-P | Field mustard | nucleus | 34.98 | 34.98 |
| CDY28678 | Canola | nucleus | 34.98 | 34.98 |
| PGSC0003DMT400004838 | Potato | extracellular | 41.91 | 34.7 |
| AT1G24090.1 | Thale cress | mitochondrion, plastid | 40.26 | 34.56 |
| CDX74299 | Canola | cytosol | 22.11 | 34.18 |
| CDX74301 | Canola | mitochondrion | 20.46 | 34.07 |
| Solyc05g006090.2.1 | Tomato | nucleus | 40.92 | 33.79 |
| CDX91946 | Canola | cytosol | 21.45 | 33.51 |
| CDY16247 | Canola | cytosol, nucleus, plastid | 39.27 | 30.67 |
| CDY71303 | Canola | nucleus | 20.46 | 30.54 |
| CDY60797 | Canola | golgi, nucleus, plastid | 36.96 | 18.45 |
| Bra024633.1-P | Field mustard | cytosol, nucleus, plastid | 28.71 | 14.57 |
| CDY16246 | Canola | mitochondrion | 9.24 | 12.96 |
Protein Annotations
| MapMan:15.3.7.2.2 | Gene3D:3.30.420.10 | Gene3D:3.40.970.10 | UniProt:A0A1D6LIH8 | ProteinID:AQK79607.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004523 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0090502 | InterPro:IPR002156 |
| InterPro:IPR036397 | InterPro:IPR037056 | PFAM:PF01693 | PFAM:PF13456 | PFscan:PS50879 | PANTHER:PTHR33033 |
| PANTHER:PTHR33033:SF30 | InterPro:RNaseH-like_sf | InterPro:RNaseH_domain | InterPro:RNaseH_sf | InterPro:RNase_H1_N | InterPro:RNase_H1_N_sf |
| InterPro:Ribosomal_L9/RNase_H1_N | SUPFAM:SSF53098 | SUPFAM:SSF55658 | UniParc:UPI00084481B2 | EnsemblPlantsGene:Zm00001d035750 | EnsemblPlants:Zm00001d035750_P001 |
| EnsemblPlants:Zm00001d035750_T001 | SEG:seg | : | : | : | : |
Description
RNase H family protein
Coordinates
chr6:+:45230933..45235975
Molecular Weight (calculated)
32953.3 Da
IEP (calculated)
7.896
GRAVY (calculated)
-0.270
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MVIWSCSSCL HGFIPRAAWR RHYPLLSPRP PASPPPIHHF SSARRSTKKS APKAPMGSSI PAAKALIDSS REPFYVIRKG DVIGVYKNLS DCQAQASKSV
101: LHPSVTVYKG YSLRKETEEY LAARGFRNAV CSIGAADASD ELFGDLVPCP FQQPDENTQS ILKMSQGQEM ETRSSEHPKV ADLEPLPDSE LSCILEFDGA
201: CKGNPGKSGA GVIIRRLDGS VIAVLREGLG IMTNNAAEYR ALILGLNYAS KKGFKYIRCQ GDSKLVCNQE FNSDADVQAN FGCQLAGIDL AFELLATKQI
301: PDD
101: LHPSVTVYKG YSLRKETEEY LAARGFRNAV CSIGAADASD ELFGDLVPCP FQQPDENTQS ILKMSQGQEM ETRSSEHPKV ADLEPLPDSE LSCILEFDGA
201: CKGNPGKSGA GVIIRRLDGS VIAVLREGLG IMTNNAAEYR ALILGLNYAS KKGFKYIRCQ GDSKLVCNQE FNSDADVQAN FGCQLAGIDL AFELLATKQI
301: PDD
001: MNCLSHARSY IALGLLKRSS YVSSIPWNEC FFYMPSKSCL KPVAVSSVFG ICSVHSYSSR SKAVKSKMLS STVVSAVDKE KDAFFVVRKG DVIGIYKDLS
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA
Arabidopsis Description
RNase H domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7R5]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.