CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74299	Canola	cytosol	81.44	80.61
CDX74301	Canola	mitochondrion	56.7	60.44
CDY71303	Canola	nucleus	58.25	55.66
PGSC0003DMT400085909	Potato	cytosol	28.87	49.12
GSMUA_Achr9P16450_001	Banana	nucleus	40.21	41.71
HORVU5Hr1G067140.3	Barley	nucleus	31.96	41.33
CDY28678	Canola	nucleus	60.31	38.61
Solyc02g087130.2.1	Tomato	nucleus	45.88	30.9
Solyc02g087140.2.1	Tomato	cytosol	44.85	30.1
KRH18596	Soybean	nucleus	43.81	30.04
Zm00001d032798_P001	Maize	nucleus	42.27	28.08
KXG38410	Sorghum	cytosol	42.27	28.08
Zm00001d049892_P001	Maize	mitochondrion	32.99	27.0
TraesCS7A01G025300.1	Wheat	mitochondrion	45.36	25.36
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	42.27	25.31
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	42.27	25.31
Os10t0458700-02	Rice	nucleus, plasma membrane	41.75	25.08
KXG21007	Sorghum	mitochondrion	43.81	25.07
TraesCS7D01G023200.1	Wheat	mitochondrion	44.85	24.93
TraesCS1B01G161700.1	Wheat	cytosol	34.02	24.81
Os08t0177800-00	Rice	mitochondrion	44.85	24.79
TraesCS4A01G463700.1	Wheat	plastid	44.33	24.78
TraesCS5A01G355500.1	Wheat	plastid	42.27	24.05
GSMUA_Achr9P17780_001	Banana	mitochondrion	38.66	23.89
Zm00001d035750_P001	Maize	plastid	33.51	21.45
TraesCS5D01G363800.1	Wheat	golgi, mitochondrion	43.3	21.32
CDY16247	Canola	cytosol, nucleus, plastid	37.11	18.56
CDY16246	Canola	mitochondrion	13.4	12.04
CDY60797	Canola	golgi, nucleus, plastid	37.63	12.03
GSMUA_Achr9P16430_001	Banana	plasma membrane	10.31	11.05

Protein Annotations

MapMan:15.3.7.2.2	Gene3D:2.20.70.10	Gene3D:3.30.420.10	GO:A0A078DRN1	EnsemblPlants:CDX91946	ProteinID:CDX91946
ProteinID:CDX91946.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004523
GO:GO:0005488	GO:GO:0005515	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00153582001	InterPro:IPR001202	InterPro:IPR002156
InterPro:IPR036397	PFAM:PF00397	PFAM:PF13456	PFscan:PS50020	PFscan:PS50879	PANTHER:PTHR33033
PANTHER:PTHR33033:SF30	InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf	SMART:SM00456	SUPFAM:SSF51045
SUPFAM:SSF53098	UniParc:UPI0004EE6E9B	InterPro:WW_dom	InterPro:WW_dom_sf	:	:

Description

BnaC03g32480D

Coordinates

chrLK031870:+:943026..944248

Molecular Weight (calculated)

21602.6 Da

IEP (calculated)

7.372

GRAVY (calculated)

-0.420

Length

194 amino acids

Sequence
(BLAST)

001: MDHSLPKPWK CLVDDRTGNL YFWNPETNVA QYERPICPPP RNVAQGSCTI EFDGASRGNP GRAGAGAVLR ASDNTVLFYL REGLGFATNN VAEYRALILG
101: LECALSKGFR NVRVQGDSML VCMQQVQGAW RVQDPKMAQL CGQAKELMRQ FSSFHIQHVG RELNSEADAQ ANHAINLAEN ETEEIAGGFR RRIY

Best Arabidopsis Sequence Match ( AT3G01410.1 )
(BLAST)

001: MGSTMEDEKD AFYIVRKGDI IGVYRSLSEC QGQAGSSVSH PAMSVYKGYG WPKGAEDLLS SFGIKNALFS VNASHVKDDA FGKLIPCPVQ QPSSSQGESL
101: NKSSPSKRLQ DMGSGESGSF SPSPPQKQLK IENDMLRRIP SSLLTRTPIR QNDSCTIEFD GASKGNPGKA GAGAVLRASD NSVLFYLREG VGNATNNVAE
201: YRALLLGLRS ALDKGFKNVH VLGDSMLVCM QVQGAWKTNH PKMAELCKQA KELMNSFKTF DIKHIAREKN SEADKQANSA IFLADGQTQV ISGG

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JEB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.