Factsheet for Solyc02g087130.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
peroxisome 1
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g087140.2.1	Tomato	cytosol	88.19	87.89
PGSC0003DMT400085909	Potato	cytosol	24.65	62.28
Solyc04g005010.2.1	Tomato	nucleus	53.47	54.23
AT3G01410.1	Thale cress	nucleus	52.78	51.7
KRH18596	Soybean	nucleus	49.65	50.53
GSMUA_Achr9P16450_001	Banana	nucleus	31.6	48.66
Bra040514.1-P	Field mustard	nucleus	50.35	47.85
CDY28678	Canola	nucleus	50.35	47.85
Solyc01g008060.2.1	Tomato	nucleus	49.65	47.19
Zm00001d049892_P001	Maize	mitochondrion	37.85	45.99
CDX91946	Canola	cytosol	30.9	45.88
HORVU5Hr1G067140.3	Barley	nucleus	23.61	45.33
CDX74301	Canola	mitochondrion	28.47	45.05
CDX74299	Canola	cytosol	30.21	44.39
KXG38410	Sorghum	cytosol	44.44	43.84
Zm00001d032798_P001	Maize	nucleus	43.4	42.81
CDY71303	Canola	nucleus	29.51	41.87
Solyc05g006090.2.1	Tomato	nucleus	53.12	41.69
Os10t0458700-02	Rice	nucleus, plasma membrane	45.49	40.56
TraesCS7D01G023200.1	Wheat	mitochondrion	48.61	40.11
TraesCS4A01G463700.1	Wheat	plastid	47.92	39.77
TraesCS7A01G025300.1	Wheat	mitochondrion	47.92	39.77
KXG21007	Sorghum	mitochondrion	46.53	39.53
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	44.44	39.51
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	44.1	39.2
TraesCS1B01G161700.1	Wheat	cytosol	36.11	39.1
TraesCS5A01G355500.1	Wheat	plastid	45.83	38.71
Os08t0177800-00	Rice	mitochondrion	46.53	38.18
Zm00001d035750_P001	Maize	plastid	39.24	37.29
GSMUA_Achr9P17780_001	Banana	mitochondrion	40.28	36.94
GSMUA_Achr9P16430_001	Banana	plasma membrane	22.92	36.46
TraesCS5D01G363800.1	Wheat	golgi, mitochondrion	47.22	34.52

Protein Annotations

MapMan:15.3.7.2.2	Gene3D:3.30.420.10	UniProt:G8Z263	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0004523	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0090502	EMBL:GQ261241	InterPro:IPR002156	InterPro:IPR036397
PFAM:PF13456	PFscan:PS50879	PANTHER:PTHR33033	PANTHER:PTHR33033:SF30	InterPro:RNaseH-like_sf	InterPro:RNaseH_domain
InterPro:RNaseH_sf	SUPFAM:SSF53098	EnsemblPlantsGene:Solyc02g087130.2	EnsemblPlants:Solyc02g087130.2.1	UniParc:UPI000243C63F	SEG:seg

Description

Hop-interacting protein THI034 [Source:UniProtKB/TrEMBL;Acc:G8Z263]

Coordinates

chr2:+:49629435..49636163

Molecular Weight (calculated)

31766.3 Da

IEP (calculated)

7.777

GRAVY (calculated)

-0.267

Length

288 amino acids

Sequence
(BLAST)

001: MGDEKDAFYV VRKGDVIGVY KNLSDLQALL RTSIGEPAIS VFKGYRLTKE SEEYLASHGL KNAMYSMDFS DVRDDLFGTL IPCPFRQPGS SKDKIVGKNV
101: QEKRMQMELV ASPSFAAAGQ QKLAKLDNFL EAPPISSYPS PYMQCSCILE FDGASKGNPG LAGAGAVLRA ADGSMVFRLR EGVGVATNNV AEYRGVILGL
201: RYALEKGFKH IKVKGDSKLV CMQTQGIWKC KNQNMAELSK IVKELKDQFM SFQINHMDRE SNTEADAQAN LAVYLKNGEI QVECDMIT

Best Arabidopsis Sequence Match ( AT3G01410.1 )
(BLAST)

001: MGSTMEDEKD AFYIVRKGDI IGVYRSLSEC QGQAGSSVSH PAMSVYKGYG WPKGAEDLLS SFGIKNALFS VNASHVKDDA FGKLIPCPVQ QPSSSQGESL
101: NKSSPSKRLQ DMGSGESGSF SPSPPQKQLK IENDMLRRIP SSLLTRTPIR QNDSCTIEFD GASKGNPGKA GAGAVLRASD NSVLFYLREG VGNATNNVAE
201: YRALLLGLRS ALDKGFKNVH VLGDSMLVCM QVQGAWKTNH PKMAELCKQA KELMNSFKTF DIKHIAREKN SEADKQANSA IFLADGQTQV ISGG

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JEB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.