Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G025300.1 | Wheat | mitochondrion | 96.25 | 96.25 |
| TraesCS7D01G023200.1 | Wheat | mitochondrion | 95.68 | 95.13 |
| HORVU5Hr1G067140.3 | Barley | nucleus | 38.04 | 88.0 |
| TraesCS5A01G355500.1 | Wheat | plastid | 76.37 | 77.71 |
| Os08t0177800-00 | Rice | mitochondrion | 65.99 | 65.24 |
| Zm00001d049892_P001 | Maize | mitochondrion | 43.23 | 63.29 |
| KXG21007 | Sorghum | mitochondrion | 57.64 | 59.0 |
| Zm00001d035750_P001 | Maize | plastid | 48.41 | 55.45 |
| Solyc04g005010.2.1 | Tomato | nucleus | 42.36 | 51.76 |
| PGSC0003DMT400040239 | Potato | nucleus | 40.92 | 49.13 |
| PGSC0003DMT400085909 | Potato | cytosol | 16.14 | 49.12 |
| KRG93392 | Soybean | nucleus | 21.61 | 49.02 |
| Solyc02g087140.2.1 | Tomato | cytosol | 40.06 | 48.1 |
| Solyc02g087130.2.1 | Tomato | nucleus | 39.77 | 47.92 |
| Solyc01g008060.2.1 | Tomato | nucleus | 40.92 | 46.86 |
| PGSC0003DMT400042267 | Potato | nucleus | 40.92 | 46.86 |
| KRH18596 | Soybean | nucleus | 36.89 | 45.23 |
| CDX74301 | Canola | mitochondrion | 23.63 | 45.05 |
| CDX74299 | Canola | cytosol | 25.36 | 44.9 |
| VIT_01s0026g00690.t01 | Wine grape | mitochondrion | 42.65 | 44.71 |
| CDX91946 | Canola | cytosol | 24.78 | 44.33 |
| PGSC0003DMT400004838 | Potato | extracellular | 45.82 | 43.44 |
| AT3G01410.1 | Thale cress | nucleus | 36.6 | 43.2 |
| CDY28678 | Canola | nucleus | 37.46 | 42.9 |
| Bra040514.1-P | Field mustard | nucleus | 37.46 | 42.9 |
| KRG99252 | Soybean | mitochondrion | 43.23 | 42.61 |
| KRH45746 | Soybean | nucleus | 43.52 | 42.42 |
| GSMUA_Achr9P16430_001 | Banana | plasma membrane | 21.61 | 41.44 |
| AT1G24090.1 | Thale cress | mitochondrion, plastid | 41.79 | 41.08 |
| Solyc05g006090.2.1 | Tomato | nucleus | 43.23 | 40.87 |
| AT5G51080.1 | Thale cress | mitochondrion | 37.75 | 40.68 |
| CDY71303 | Canola | nucleus | 23.05 | 39.41 |
| TraesCS1A01G144300.2 | Wheat | cytosol, nucleus, plastid | 34.58 | 37.04 |
| CDY16247 | Canola | cytosol, nucleus, plastid | 39.77 | 35.57 |
| CDY60797 | Canola | golgi, nucleus, plastid | 39.48 | 22.57 |
| CDY16246 | Canola | mitochondrion | 10.66 | 17.13 |
| Bra024633.1-P | Field mustard | cytosol, nucleus, plastid | 27.95 | 16.25 |
Protein Annotations
| MapMan:15.3.7.2.2 | Gene3D:3.30.420.10 | Gene3D:3.40.970.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004523 | GO:GO:0005488 | GO:GO:0016787 | InterPro:IPR002156 | InterPro:IPR036397 |
| InterPro:IPR037056 | PFAM:PF01693 | PFAM:PF13456 | PFscan:PS50879 | PANTHER:PTHR33033 | PANTHER:PTHR33033:SF30 |
| InterPro:RNaseH-like_sf | InterPro:RNaseH_domain | InterPro:RNaseH_sf | InterPro:RNase_H1_N | InterPro:RNase_H1_N_sf | InterPro:Ribosomal_L9/RNase_H1_N |
| SUPFAM:SSF53098 | SUPFAM:SSF55658 | EnsemblPlantsGene:TraesCS4A01G463700 | EnsemblPlants:TraesCS4A01G463700.1 | TIGR:cd09279 | SEG:seg |
Description
No Description!
Coordinates
chr4A:+:727734378..727738873
Molecular Weight (calculated)
37900.0 Da
IEP (calculated)
9.073
GRAVY (calculated)
-0.436
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSCYSSSSL CGISRAAWRH VVAGTLSLSG SHNQHRHSLR YLPLRPPVPP IALGLAERFF SSSSPKRSTK RSAAKKATPP PMDSAGGDPF YVVRKGDVIG
101: IYKNLADCQA QVSNSVCDPS VTVYKGYSLR KDTEEYLAAR GLKNALYSIN AADARDELFD DLAPCPFQQP DGTSTLKRPQ EVETGPSKKH PKVAEQEPLP
201: DSHLSCILEF DGACKGNPGK SGAGVVVRRS DGSVIAQLRE GLGIATNNAA EYRALLLGLR YAAKKGFKYV RAQGDSKLVC NQVQDLWRVR NDNMADLCKK
301: VKDLKGNFLQ FQINHVLREF NADADAQANF AVELPVGEIQ EQSNFPC
101: IYKNLADCQA QVSNSVCDPS VTVYKGYSLR KDTEEYLAAR GLKNALYSIN AADARDELFD DLAPCPFQQP DGTSTLKRPQ EVETGPSKKH PKVAEQEPLP
201: DSHLSCILEF DGACKGNPGK SGAGVVVRRS DGSVIAQLRE GLGIATNNAA EYRALLLGLR YAAKKGFKYV RAQGDSKLVC NQVQDLWRVR NDNMADLCKK
301: VKDLKGNFLQ FQINHVLREF NADADAQANF AVELPVGEIQ EQSNFPC
001: MNCLSHARSY IALGLLKRSS YVSSIPWNEC FFYMPSKSCL KPVAVSSVFG ICSVHSYSSR SKAVKSKMLS STVVSAVDKE KDAFFVVRKG DVIGIYKDLS
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA
Arabidopsis Description
RNase H domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7R5]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.