CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99252	Soybean	mitochondrion	84.27	85.23
Solyc04g005010.2.1	Tomato	nucleus	48.6	60.92
PGSC0003DMT400040239	Potato	nucleus	48.88	60.21
PGSC0003DMT400042267	Potato	nucleus	49.16	57.76
Solyc01g008060.2.1	Tomato	nucleus	48.88	57.43
KRG93392	Soybean	nucleus	23.88	55.56
KRH18596	Soybean	nucleus	44.1	55.48
VIT_01s0026g00690.t01	Wine grape	mitochondrion	49.16	52.87
PGSC0003DMT400004838	Potato	extracellular	53.37	51.91
Solyc05g006090.2.1	Tomato	nucleus	51.4	49.86
Zm00001d049892_P001	Maize	mitochondrion	33.15	49.79
AT1G24090.1	Thale cress	mitochondrion, plastid	49.16	49.58
GSMUA_Achr9P16450_001	Banana	nucleus	25.84	49.2
AT5G51080.1	Thale cress	mitochondrion	44.38	49.07
KXG38410	Sorghum	cytosol	36.52	44.52
KXG21007	Sorghum	mitochondrion	42.13	44.25
Zm00001d032798_P001	Maize	nucleus	36.24	44.18
TraesCS7A01G025300.1	Wheat	mitochondrion	42.7	43.8
GSMUA_Achr9P17780_001	Banana	mitochondrion	38.48	43.63
TraesCS4A01G463700.1	Wheat	plastid	42.42	43.52
TraesCS7D01G023200.1	Wheat	mitochondrion	42.42	43.27
GSMUA_Achr9P16430_001	Banana	plasma membrane	21.63	42.54
TraesCS5A01G355500.1	Wheat	plastid	40.73	42.52
HORVU5Hr1G067140.3	Barley	nucleus	17.7	42.0
Zm00001d035750_P001	Maize	plastid	35.67	41.91
Os08t0177800-00	Rice	mitochondrion	41.29	41.88
TraesCS1B01G161700.1	Wheat	cytosol	31.18	41.73
CDY16247	Canola	cytosol, nucleus, plastid	44.66	40.98
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	36.24	39.81
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	36.24	39.81
Os10t0458700-02	Rice	nucleus, plasma membrane	35.67	39.32
TraesCS5D01G363800.1	Wheat	golgi, mitochondrion	41.29	37.31
CDY60797	Canola	golgi, nucleus, plastid	42.98	25.21
Bra024633.1-P	Field mustard	cytosol, nucleus, plastid	29.49	17.59

Protein Annotations

EntrezGene:100779114	MapMan:15.3.7.2.2	Gene3D:3.30.420.10	EMBL:ACUP02005285	EnsemblPlantsGene:GLYMA_08G291300	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004523	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0090502	InterPro:IPR002156
InterPro:IPR036397	UniProt:K7L9L9	EnsemblPlants:KRH45746	ProteinID:KRH45746	ProteinID:KRH45746.1	PFAM:PF13456
PFscan:PS50879	PANTHER:PTHR33033	PANTHER:PTHR33033:SF30	InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf
SUPFAM:SSF53098	UniParc:UPI0002338708	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:40517240..40524755

Molecular Weight (calculated)

39034.6 Da

IEP (calculated)

8.780

GRAVY (calculated)

-0.302

Length

356 amino acids

Sequence
(BLAST)

001: MNRLSQLSSY TAAIVGSTVR LIANRSLRHR CCSFPAKPEY RGIRSFRSEF ALTAARCYSA KKGRKSKAEP EVPAVVMEQE KDAFYVVRKG DVVGIYNSLA
101: DSQAQVGSSV CNPPVSVYKG YSLSKDTEEY LVSHGLKNAL YTIRATDLKE DLFGMLVPCP FQEPSTKEGT SNKDVSKQRS LGVLAQDEKV ISEDPFRKQV
201: KLEYAEVAEA PSHATRTCFV EFDGASKGNP GKAGAGAILR ANDGSLICRV REGVGIATNN AAEYRAMILG MKYALKKGFT GICIQGDSKL VCMQIDGSWK
301: VKNENLFTLY NVAKELKDKF SSFQISHVLR NFNSDADAQA NLAINLVDGQ VQEECV

Best Arabidopsis Sequence Match ( AT1G24090.1 )
(BLAST)

001: MNCLSHARSY IALGLLKRSS YVSSIPWNEC FFYMPSKSCL KPVAVSSVFG ICSVHSYSSR SKAVKSKMLS STVVSAVDKE KDAFFVVRKG DVIGIYKDLS
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA

Arabidopsis Description

RNase H domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7R5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.