CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45746	Soybean	nucleus	85.23	84.27
Solyc04g005010.2.1	Tomato	nucleus	50.28	62.32
PGSC0003DMT400040239	Potato	nucleus	48.58	59.17
PGSC0003DMT400042267	Potato	nucleus	49.43	57.43
Solyc01g008060.2.1	Tomato	nucleus	49.15	57.1
KRH18596	Soybean	nucleus	44.6	55.48
KRG93392	Soybean	nucleus	23.86	54.9
VIT_01s0026g00690.t01	Wine grape	mitochondrion	49.72	52.87
PGSC0003DMT400004838	Potato	extracellular	53.69	51.64
Zm00001d049892_P001	Maize	mitochondrion	34.66	51.48
GSMUA_Achr9P16450_001	Banana	nucleus	26.42	49.73
Solyc05g006090.2.1	Tomato	nucleus	51.42	49.32
AT1G24090.1	Thale cress	mitochondrion, plastid	48.58	48.44
AT5G51080.1	Thale cress	mitochondrion	44.03	48.14
KXG21007	Sorghum	mitochondrion	42.9	44.54
TraesCS5A01G355500.1	Wheat	plastid	42.33	43.7
TraesCS7A01G025300.1	Wheat	mitochondrion	42.9	43.52
KXG38410	Sorghum	cytosol	36.08	43.49
HORVU5Hr1G067140.3	Barley	nucleus	18.47	43.33
GSMUA_Achr9P17780_001	Banana	mitochondrion	38.64	43.31
TraesCS7D01G023200.1	Wheat	mitochondrion	42.9	43.27
TraesCS4A01G463700.1	Wheat	plastid	42.61	43.23
Zm00001d032798_P001	Maize	nucleus	35.8	43.15
GSMUA_Achr9P16430_001	Banana	plasma membrane	21.31	41.44
Os08t0177800-00	Rice	mitochondrion	41.19	41.31
TraesCS1B01G161700.1	Wheat	cytosol	30.97	40.98
Zm00001d035750_P001	Maize	plastid	35.23	40.92
CDY16247	Canola	cytosol, nucleus, plastid	44.6	40.46
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	37.22	40.43
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	36.93	40.12
Os10t0458700-02	Rice	nucleus, plasma membrane	35.51	38.7
TraesCS5D01G363800.1	Wheat	golgi, mitochondrion	42.33	37.82
CDY60797	Canola	golgi, nucleus, plastid	42.33	24.55
Bra024633.1-P	Field mustard	cytosol, nucleus, plastid	28.98	17.09

Protein Annotations

EntrezGene:100809644	MapMan:15.3.7.2.2	Gene3D:3.30.420.10	UniProt:A0A0R0FBC1	EMBL:ACUP02011013	EnsemblPlantsGene:GLYMA_18G133000
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004523	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0090502
InterPro:IPR002156	InterPro:IPR036397	EnsemblPlants:KRG99252	ProteinID:KRG99252	ProteinID:KRG99252.1	PFAM:PF13456
PFscan:PS50879	PANTHER:PTHR33033	PANTHER:PTHR33033:SF30	InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf
SUPFAM:SSF53098	UniParc:UPI0003DEB9F4	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:18678477..18685767

Molecular Weight (calculated)

38535.0 Da

IEP (calculated)

9.151

GRAVY (calculated)

-0.347

Length

352 amino acids

Sequence
(BLAST)

001: MYRLSQLSSY TASIVGSTVR LIANRSLHHQ CCSLPAKPEY RGIRSFRSEF AVTTRCYSAK KGRKSKVEPE AMKQEKDAFY VVRKGDVVGI YNSLADSQAQ
101: VGSSVCNPPV SVFKGYSLSK DTEEYLVSHG LKNALYTIRA TDLKEDLFGM LVPCPLQEPS TKESTSNKDV SKKRSLGVLG QDEQKVISED PLRKQVKLDH
201: AAVAEAPLHA TQTCFVEFDG ASKGNPGKAG AGAILRANDG SLICRLREGV GIATNNAAEY RAMILGMKYA LKKGFTGIRI QGDSKLVCMQ IDGSWKVKNE
301: NLSTLYNVAK ELKDKFSSFQ ISHVLRNFNS DADAQANLAI NLADGQVQEE CV

Best Arabidopsis Sequence Match ( AT1G24090.1 )
(BLAST)

001: MNCLSHARSY IALGLLKRSS YVSSIPWNEC FFYMPSKSCL KPVAVSSVFG ICSVHSYSSR SKAVKSKMLS STVVSAVDKE KDAFFVVRKG DVIGIYKDLS
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA

Arabidopsis Description

RNase H domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7R5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.