Factsheet for Zm00001d049892_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

mitochondrion: 27297264
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400085909	Potato	cytosol	25.32	52.63
HORVU5Hr1G067140.3	Barley	nucleus	32.07	50.67
KRG93392	Soybean	nucleus	31.65	49.02
Zm00001d035750_P001	Maize	plastid	57.38	44.88
Os08t0177800-00	Rice	mitochondrion	65.82	44.44
TraesCS7A01G025300.1	Wheat	mitochondrion	63.71	43.52
TraesCS4A01G463700.1	Wheat	plastid	63.29	43.23
TraesCS7D01G023200.1	Wheat	mitochondrion	63.29	42.98
TraesCS5A01G355500.1	Wheat	plastid	59.49	41.35
Solyc04g005010.2.1	Tomato	nucleus	48.1	40.14
PGSC0003DMT400040239	Potato	nucleus	46.41	38.06
Solyc02g087130.2.1	Tomato	nucleus	45.99	37.85
TraesCS5D01G363800.1	Wheat	golgi, mitochondrion	61.6	37.06
Solyc02g087140.2.1	Tomato	cytosol	45.15	37.02
KRH18596	Soybean	nucleus	43.88	36.75
GSMUA_Achr9P16430_001	Banana	plasma membrane	27.85	36.46
PGSC0003DMT400042267	Potato	nucleus	45.57	35.64
Solyc01g008060.2.1	Tomato	nucleus	45.57	35.64
VIT_01s0026g00690.t01	Wine grape	mitochondrion	48.95	35.05
Zm00001d032798_P001	Maize	nucleus	43.04	34.93
CDX74299	Canola	cytosol	28.69	34.69
KRG99252	Soybean	mitochondrion	51.48	34.66
CDX74301	Canola	mitochondrion	26.58	34.62
AT3G01410.1	Thale cress	nucleus	41.77	33.67
CDY28678	Canola	nucleus	42.62	33.33
Bra040514.1-P	Field mustard	nucleus	42.62	33.33
AT5G51080.1	Thale cress	mitochondrion	45.15	33.23
KRH45746	Soybean	nucleus	49.79	33.15
CDX91946	Canola	cytosol	27.0	32.99
CDY71303	Canola	nucleus	27.43	32.02
AT1G24090.1	Thale cress	mitochondrion, plastid	46.84	31.44
PGSC0003DMT400004838	Potato	extracellular	48.1	31.15
Solyc05g006090.2.1	Tomato	nucleus	46.41	29.97
CDY16247	Canola	cytosol, nucleus, plastid	44.73	27.32
CDY60797	Canola	golgi, nucleus, plastid	43.88	17.13
CDY16246	Canola	mitochondrion	13.5	14.81
Bra024633.1-P	Field mustard	cytosol, nucleus, plastid	31.65	12.56

Protein Annotations

MapMan:15.3.7.2.2	Gene3D:3.30.420.10	Gene3D:3.40.970.10	UniProt:A0A1D6PYJ6	ProteinID:AQK51526.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004523	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0090502	InterPro:IPR002156
InterPro:IPR036397	InterPro:IPR037056	PFAM:PF01693	PFAM:PF13456	PFscan:PS50879	PANTHER:PTHR33033
PANTHER:PTHR33033:SF30	InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf	InterPro:RNase_H1_N	InterPro:RNase_H1_N_sf
InterPro:Ribosomal_L9/RNase_H1_N	SUPFAM:SSF53098	SUPFAM:SSF55658	UniParc:UPI000842F11A	EnsemblPlantsGene:Zm00001d049892	EnsemblPlants:Zm00001d049892_P001
EnsemblPlants:Zm00001d049892_T001	:	:	:	:	:

Description

RNase H family protein

Coordinates

chr4:-:51079268..51081144

Molecular Weight (calculated)

25848.0 Da

IEP (calculated)

9.265

GRAVY (calculated)

-0.144

Length

237 amino acids

Sequence
(BLAST)

001: MDSSSVGEPF YVVRKGDVIG IYKTLSECQA QVSNSVRDPS VTVFKGYSLR KDTEEYLAAR GLRNALYAID ATDARDELFD DLVPCPFQVT RTMLSARKFQ
101: LLQQPDGAAS STLKRSQEIL SCILEFDGAS KGNPGKAGAG AIIRQVDGSV IAQLREGLGI ATNNAAEYRA LILGLTYAAK KGFKYIRAQG DSKLVCNQVV
201: ASFNMPKYVL SFKEPLSKSV HIEIKTLSQS LQSAYKI

Best Arabidopsis Sequence Match ( AT1G24090.1 )
(BLAST)

001: MNCLSHARSY IALGLLKRSS YVSSIPWNEC FFYMPSKSCL KPVAVSSVFG ICSVHSYSSR SKAVKSKMLS STVVSAVDKE KDAFFVVRKG DVIGIYKDLS
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA

Arabidopsis Description

RNase H domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7R5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.