Factsheet for Bra040514.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28678	Canola	nucleus	99.67	99.67
AT3G01410.1	Thale cress	nucleus	72.61	74.83
PGSC0003DMT400085909	Potato	cytosol	19.8	52.63
Solyc02g087140.2.1	Tomato	cytosol	48.84	51.21
GSMUA_Achr9P16450_001	Banana	nucleus	31.35	50.8
Solyc02g087130.2.1	Tomato	nucleus	47.85	50.35
KRH18596	Soybean	nucleus	44.55	47.7
HORVU5Hr1G067140.3	Barley	nucleus	23.43	47.33
Zm00001d032798_P001	Maize	nucleus	41.58	43.15
KXG38410	Sorghum	cytosol	41.58	43.15
Zm00001d049892_P001	Maize	mitochondrion	33.33	42.62
Os10t0458700-02	Rice	nucleus, plasma membrane	42.57	39.94
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	41.25	38.58
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	41.25	38.58
TraesCS1B01G161700.1	Wheat	cytosol	33.66	38.35
TraesCS7D01G023200.1	Wheat	mitochondrion	43.56	37.82
TraesCS7A01G025300.1	Wheat	mitochondrion	43.23	37.75
TraesCS4A01G463700.1	Wheat	plastid	42.9	37.46
GSMUA_Achr9P17780_001	Banana	mitochondrion	38.61	37.26
TraesCS5A01G355500.1	Wheat	plastid	41.25	36.66
GSMUA_Achr9P16430_001	Banana	plasma membrane	21.78	36.46
Os08t0177800-00	Rice	mitochondrion	41.91	36.18
KXG21007	Sorghum	mitochondrion	39.27	35.1
Zm00001d035750_P001	Maize	plastid	34.98	34.98
TraesCS5D01G363800.1	Wheat	golgi, mitochondrion	41.91	32.23
Bra024633.1-P	Field mustard	cytosol, nucleus, plastid	27.72	14.07

Protein Annotations

MapMan:15.3.7.2.2	Gene3D:3.30.420.10	Gene3D:3.40.970.10	EnsemblPlantsGene:Bra040514	EnsemblPlants:Bra040514.1	EnsemblPlants:Bra040514.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004523	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0090502	InterPro:IPR002156	InterPro:IPR036397
InterPro:IPR037056	UniProt:M4FHD6	PFAM:PF01693	PFAM:PF13456	PFscan:PS50879	PANTHER:PTHR33033
PANTHER:PTHR33033:SF30	InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf	InterPro:RNase_H1_N	InterPro:RNase_H1_N_sf
InterPro:Ribosomal_L9/RNase_H1_N	SUPFAM:SSF53098	SUPFAM:SSF55658	UniParc:UPI000254508D	SEG:seg	:

Description

AT3G01410 (E=2e-108) | RNase H domain-containing protein

Coordinates

chrA01:+:28547551..28549121

Molecular Weight (calculated)

32895.9 Da

IEP (calculated)

8.703

GRAVY (calculated)

-0.498

Length

303 amino acids

Sequence
(BLAST)

001: MGSAMGGDEK DAFYVVRKGD IVGVYRSFSE CQQQASSSVS DPAMSVYKGY GWPQGAQDFI SSFGLKNALF SVNATHLKDD SVFGKLIPCP LQQPSSSSSQ
101: GDSLDKPSQP KRLLQQMETD ESPSSSQPQK HLKTENSSGG MVPRLAVPSS QLTRRPILQN DSCNIEFDGA SKGNPGKAGA GAVLRASHDN SVLFYLREGV
201: GTATNNVAEY RALLLGLKSA LHKGFKNVRV QGDSMLVCMQ VQDIWKTKHP KMAELCKQAK ELMKQFKSFH IQHIDREFNS VADAQANHAI NLPEGQTKEI
301: AGG

Best Arabidopsis Sequence Match ( AT3G01410.1 )
(BLAST)

001: MGSTMEDEKD AFYIVRKGDI IGVYRSLSEC QGQAGSSVSH PAMSVYKGYG WPKGAEDLLS SFGIKNALFS VNASHVKDDA FGKLIPCPVQ QPSSSQGESL
101: NKSSPSKRLQ DMGSGESGSF SPSPPQKQLK IENDMLRRIP SSLLTRTPIR QNDSCTIEFD GASKGNPGKA GAGAVLRASD NSVLFYLREG VGNATNNVAE
201: YRALLLGLRS ALDKGFKNVH VLGDSMLVCM QVQGAWKTNH PKMAELCKQA KELMNSFKTF DIKHIAREKN SEADKQANSA IFLADGQTQV ISGG

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JEB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.