Factsheet for GSMUA_Achr9P16450_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400085909	Potato	cytosol	29.41	48.25
CDX74301	Canola	mitochondrion	40.64	41.76
CDX74299	Canola	cytosol	42.25	40.31
CDX91946	Canola	cytosol	41.71	40.21
CDY71303	Canola	nucleus	39.04	35.96
Solyc04g005010.2.1	Tomato	nucleus	50.27	33.1
PGSC0003DMT400040239	Potato	nucleus	49.2	31.83
Solyc02g087130.2.1	Tomato	nucleus	48.66	31.6
Bra040514.1-P	Field mustard	nucleus	50.8	31.35
CDY28678	Canola	nucleus	50.8	31.35
Solyc02g087140.2.1	Tomato	cytosol	48.13	31.14
KRH18596	Soybean	nucleus	47.06	31.1
KRG93392	Soybean	nucleus	25.13	30.72
Zm00001d032798_P001	Maize	nucleus	47.06	30.14
GSMUA_Achr9P17780_001	Banana	mitochondrion	50.27	29.94
AT3G01410.1	Thale cress	nucleus	46.52	29.59
KXG38410	Sorghum	cytosol	45.45	29.11
VIT_01s0026g00690.t01	Wine grape	mitochondrion	51.34	29.0
PGSC0003DMT400042267	Potato	nucleus	46.52	28.71
Solyc01g008060.2.1	Tomato	nucleus	46.52	28.71
Os10t0458700-02	Rice	nucleus, plasma membrane	46.52	26.93
KRG99252	Soybean	mitochondrion	49.73	26.42
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	44.92	25.93
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	44.92	25.93
KRH45746	Soybean	nucleus	49.2	25.84
TraesCS1B01G161700.1	Wheat	cytosol	36.36	25.56
AT5G51080.1	Thale cress	mitochondrion	43.85	25.47
PGSC0003DMT400004838	Potato	extracellular	49.73	25.41
Solyc05g006090.2.1	Tomato	nucleus	48.66	24.8
AT1G24090.1	Thale cress	mitochondrion, plastid	44.38	23.51
CDY16247	Canola	cytosol, nucleus, plastid	42.25	20.36
CDY60797	Canola	golgi, nucleus, plastid	42.25	13.01
GSMUA_Achr9P16430_001	Banana	plasma membrane	12.3	12.71
Bra024633.1-P	Field mustard	cytosol, nucleus, plastid	34.76	10.89
CDY16246	Canola	mitochondrion	12.3	10.65

Protein Annotations

MapMan:15.3.7.2.2	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518
GO:GO:0004523	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0090502	EnsemblPlantsGene:GSMUA_Achr9G16450_001	EnsemblPlants:GSMUA_Achr9P16450_001	EnsemblPlants:GSMUA_Achr9T16450_001	InterPro:IPR002156
InterPro:IPR036397	UniProt:M0U0V2	PFAM:PF13456	PFscan:PS50879	PANTHER:PTHR33033	PANTHER:PTHR33033:SF30
InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf	SUPFAM:SSF53098	UniParc:UPI0002965C5A	:

Description

retrotransposon protein, putative, unclassified [Source:GMGC_GENE;Acc:GSMUA_Achr9G16450_001]

Coordinates

chr9:+:11100230..11104678

Molecular Weight (calculated)

20369.3 Da

IEP (calculated)

7.502

GRAVY (calculated)

-0.271

Length

187 amino acids

Sequence
(BLAST)

001: MYNLFRKIYD IYAVETAGSG SVSTEQSNKH LKQKSSLEAK TISHPDVSCI IEFDGASKGN PGKAGAGVIL RNLDGSVISR LREGLGVVTN NVAEYQALLL
101: GMKFALKKGY KKIQAQGDSK IVCMQVEDLW KTKNATMAAL CQEAKALKES FLSFHVNHVK REFNSDADAQ ANLAVDLPTG EVTEELD

Best Arabidopsis Sequence Match ( AT1G24090.1 )
(BLAST)

001: MNCLSHARSY IALGLLKRSS YVSSIPWNEC FFYMPSKSCL KPVAVSSVFG ICSVHSYSSR SKAVKSKMLS STVVSAVDKE KDAFFVVRKG DVIGIYKDLS
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA

Arabidopsis Description

RNase H domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7R5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.