Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 5
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G51080.1 | Thale cress | mitochondrion | 66.86 | 73.29 |
| CDY16247 | Canola | cytosol, nucleus, plastid | 70.82 | 64.43 |
| Solyc04g005010.2.1 | Tomato | nucleus | 41.93 | 52.11 |
| PGSC0003DMT400040239 | Potato | nucleus | 41.36 | 50.52 |
| VIT_01s0026g00690.t01 | Wine grape | mitochondrion | 46.18 | 49.24 |
| PGSC0003DMT400042267 | Potato | nucleus | 42.21 | 49.17 |
| KRH45746 | Soybean | nucleus | 49.58 | 49.16 |
| KRG99252 | Soybean | mitochondrion | 48.44 | 48.58 |
| Solyc01g008060.2.1 | Tomato | nucleus | 41.64 | 48.51 |
| Zm00001d049892_P001 | Maize | mitochondrion | 31.44 | 46.84 |
| AT3G01410.1 | Thale cress | nucleus | 38.24 | 45.92 |
| PGSC0003DMT400004838 | Potato | extracellular | 46.46 | 44.81 |
| GSMUA_Achr9P16450_001 | Banana | nucleus | 23.51 | 44.38 |
| Solyc05g006090.2.1 | Tomato | nucleus | 45.89 | 44.14 |
| TraesCS5A01G355500.1 | Wheat | plastid | 41.36 | 42.82 |
| HORVU5Hr1G067140.3 | Barley | nucleus | 17.85 | 42.0 |
| GSMUA_Achr9P16430_001 | Banana | plasma membrane | 21.53 | 41.99 |
| TraesCS4A01G463700.1 | Wheat | plastid | 41.08 | 41.79 |
| KXG21007 | Sorghum | mitochondrion | 39.66 | 41.3 |
| TraesCS7D01G023200.1 | Wheat | mitochondrion | 40.79 | 41.26 |
| TraesCS7A01G025300.1 | Wheat | mitochondrion | 40.51 | 41.21 |
| KXG38410 | Sorghum | cytosol | 33.99 | 41.1 |
| Os08t0177800-00 | Rice | mitochondrion | 40.79 | 41.03 |
| Zm00001d032798_P001 | Maize | nucleus | 33.43 | 40.41 |
| Zm00001d035750_P001 | Maize | plastid | 34.56 | 40.26 |
| CDY60797 | Canola | golgi, nucleus, plastid | 67.71 | 39.37 |
| GSMUA_Achr9P17780_001 | Banana | mitochondrion | 34.56 | 38.85 |
| TraesCS1A01G144300.2 | Wheat | cytosol, nucleus, plastid | 35.13 | 38.27 |
| TraesCS1D01G143400.1 | Wheat | cytosol, nucleus, plastid | 34.84 | 37.96 |
| Os10t0458700-02 | Rice | nucleus, plasma membrane | 34.56 | 37.77 |
| TraesCS1B01G161700.1 | Wheat | cytosol | 28.33 | 37.59 |
| TraesCS5D01G363800.1 | Wheat | golgi, mitochondrion | 40.23 | 36.04 |
| Bra024633.1-P | Field mustard | cytosol, nucleus, plastid | 40.23 | 23.79 |
Protein Annotations
| MapMan:15.3.7.2.2 | Gene3D:3.30.420.10 | EntrezGene:839020 | UniProt:A0A178WD09 | ProteinID:AEE30476.1 | ArrayExpress:AT1G24090 |
| EnsemblPlantsGene:AT1G24090 | RefSeq:AT1G24090 | TAIR:AT1G24090 | RefSeq:AT1G24090-TAIR-G | EnsemblPlants:AT1G24090.1 | TAIR:AT1G24090.1 |
| UniProt:F4I7R5 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004523 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009534 | GO:GO:0009536 | GO:GO:0009579 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0090502 | InterPro:IPR002156 | InterPro:IPR036397 | EMBL:KX766034 |
| RefSeq:NP_001319072.1 | ProteinID:OAP16004.1 | PFAM:PF13456 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009052 | PO:PO:0025022 | PFscan:PS50879 | PANTHER:PTHR33033 | PANTHER:PTHR33033:SF30 |
| InterPro:RNaseH-like_sf | InterPro:RNaseH_domain | InterPro:RNaseH_sf | InterPro:Ribosomal_L9/RNase_H1_N | SUPFAM:SSF53098 | SUPFAM:SSF55658 |
| UniParc:UPI0001E92A98 | SEG:seg | : | : | : | : |
Description
RNase H domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7R5]
Coordinates
chr1:+:8520443..8523193
Molecular Weight (calculated)
38547.2 Da
IEP (calculated)
7.811
GRAVY (calculated)
-0.163
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MNCLSHARSY IALGLLKRSS YVSSIPWNEC FFYMPSKSCL KPVAVSSVFG ICSVHSYSSR SKAVKSKMLS STVVSAVDKE KDAFFVVRKG DVIGIYKDLS
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.