Factsheet for Solyc04g005010.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004838	Potato	extracellular	94.72	73.5
Solyc01g008060.2.1	Tomato	nucleus	76.76	71.95
Solyc05g006090.2.1	Tomato	nucleus	79.93	61.85
Solyc02g087130.2.1	Tomato	nucleus	54.23	53.47
VIT_01s0026g00690.t01	Wine grape	mitochondrion	61.62	52.87
Solyc02g087140.2.1	Tomato	cytosol	52.82	51.9
KRG99252	Soybean	mitochondrion	62.32	50.28
GSMUA_Achr9P16450_001	Banana	nucleus	33.1	50.27
KRH45746	Soybean	nucleus	60.92	48.6
Zm00001d049892_P001	Maize	mitochondrion	40.14	48.1
HORVU5Hr1G067140.3	Barley	nucleus	24.3	46.0
KXG38410	Sorghum	cytosol	45.77	44.52
Zm00001d032798_P001	Maize	nucleus	45.77	44.52
AT5G51080.1	Thale cress	mitochondrion	49.3	43.48
GSMUA_Achr9P17780_001	Banana	mitochondrion	47.89	43.31
TraesCS7A01G025300.1	Wheat	mitochondrion	51.76	42.36
TraesCS4A01G463700.1	Wheat	plastid	51.76	42.36
TraesCS7D01G023200.1	Wheat	mitochondrion	51.76	42.12
AT1G24090.1	Thale cress	mitochondrion, plastid	52.11	41.93
KXG21007	Sorghum	mitochondrion	49.65	41.59
TraesCS5A01G355500.1	Wheat	plastid	49.3	41.06
Zm00001d035750_P001	Maize	plastid	43.31	40.59
TraesCS1B01G161700.1	Wheat	cytosol	37.32	39.85
Os10t0458700-02	Rice	nucleus, plasma membrane	45.07	39.63
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	44.72	39.2
Os08t0177800-00	Rice	mitochondrion	48.24	39.03
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	44.37	38.89
GSMUA_Achr9P16430_001	Banana	plasma membrane	24.65	38.67
CDY16247	Canola	cytosol, nucleus, plastid	51.06	37.37
TraesCS5D01G363800.1	Wheat	golgi, mitochondrion	49.65	35.79
CDY60797	Canola	golgi, nucleus, plastid	49.65	23.23
Bra024633.1-P	Field mustard	cytosol, nucleus, plastid	30.99	14.74

Protein Annotations

MapMan:15.3.7.2.2	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518
GO:GO:0004523	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0090502	InterPro:IPR002156	InterPro:IPR036397	UniProt:K4BNA7	PFAM:PF13456
PFscan:PS50879	PANTHER:PTHR33033	PANTHER:PTHR33033:SF30	InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf
InterPro:Ribosomal_L9/RNase_H1_N	SUPFAM:SSF53098	SUPFAM:SSF55658	EnsemblPlantsGene:Solyc04g005010.2	EnsemblPlants:Solyc04g005010.2.1	UniParc:UPI0002765FC8

Description

No Description!

Coordinates

chr4:-:3073..8788

Molecular Weight (calculated)

31040.9 Da

IEP (calculated)

5.751

GRAVY (calculated)

-0.307

Length

284 amino acids

Sequence
(BLAST)

001: MKEDRDGFFV VRKGNLVGVY KNLSDCQTQV GSSICDPPVS VYKGYAMPKD TEDYLLSCGL KNALYSIRAA DLTEDLFGTL VPCPFQQPSS SKGGMPEHMT
101: KKRSQDVMWS EYADVAVISN DDSLTKHVKL DDHKGVQAPL SGQSCTLEFD GASKGNPGLA GAGAILRADD GSFICRLREG LGVATNNAAE YRAIILGLNY
201: ALSKGFTSIR VQGDSKLVCM QIQGLWKVKN QNISSLYEQA KQLKDRFLSF RIIHVLRESN SDADAQANIA VELADGQIQE EIEK

Best Arabidopsis Sequence Match ( AT1G24090.1 )
(BLAST)

001: MNCLSHARSY IALGLLKRSS YVSSIPWNEC FFYMPSKSCL KPVAVSSVFG ICSVHSYSSR SKAVKSKMLS STVVSAVDKE KDAFFVVRKG DVIGIYKDLS
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA

Arabidopsis Description

RNase H domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7R5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.