Factsheet for Os10t0458700-02

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus

Predictor Summary:

nucleus 5
peroxisome 1
extracellular 1
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 19502382

msms PMID: 19502382 doi

M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto

Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG38410	Sorghum	cytosol	66.87	73.97
Zm00001d032798_P001	Maize	nucleus	66.56	73.63
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	70.28	70.06
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	69.97	69.75
TraesCS1B01G161700.1	Wheat	cytosol	51.08	62.03
PGSC0003DMT400085909	Potato	cytosol	18.89	53.51
KRH18596	Soybean	nucleus	40.87	46.64
GSMUA_Achr9P16450_001	Banana	nucleus	26.93	46.52
KRG93392	Soybean	nucleus	21.98	46.41
Solyc02g087130.2.1	Tomato	nucleus	40.56	45.49
Solyc04g005010.2.1	Tomato	nucleus	39.63	45.07
CDX74301	Canola	mitochondrion	25.39	45.05
Solyc02g087140.2.1	Tomato	cytosol	40.25	44.98
PGSC0003DMT400040239	Potato	nucleus	40.25	44.98
PGSC0003DMT400042267	Potato	nucleus	41.18	43.89
AT3G01410.1	Thale cress	nucleus	39.63	43.54
Solyc01g008060.2.1	Tomato	nucleus	40.56	43.23
Bra040514.1-P	Field mustard	nucleus	39.94	42.57
CDY28678	Canola	nucleus	39.94	42.57
CDX91946	Canola	cytosol	25.08	41.75
CDX74299	Canola	cytosol	24.46	40.31
VIT_01s0026g00690.t01	Wine grape	mitochondrion	41.18	40.18
GSMUA_Achr9P17780_001	Banana	mitochondrion	38.7	39.81
CDY71303	Canola	nucleus	24.77	39.41
AT5G51080.1	Thale cress	mitochondrion	36.22	36.34
Os08t0177800-00	Rice	mitochondrion	39.01	35.9
KRH45746	Soybean	nucleus	39.32	35.67
PGSC0003DMT400004838	Potato	extracellular	40.25	35.52
KRG99252	Soybean	mitochondrion	38.7	35.51
Solyc05g006090.2.1	Tomato	nucleus	40.25	35.42
AT1G24090.1	Thale cress	mitochondrion, plastid	37.77	34.56
CDY16247	Canola	cytosol, nucleus, plastid	37.46	31.19
CDY60797	Canola	golgi, nucleus, plastid	38.7	20.59
CDY16246	Canola	mitochondrion	11.15	16.67
Bra024633.1-P	Field mustard	cytosol, nucleus, plastid	27.55	14.91

Protein Annotations

MapMan:15.3.7.2.2	Gene3D:3.30.420.10	EntrezGene:4348807	ProteinID:ABB47757.1	ProteinID:BAF26681.1	ProteinID:BAT11152.1
ProteinID:EEE51086.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004523
GO:GO:0005488	GO:GO:0006139	GO:GO:0006259	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0015074	GO:GO:0016787	GO:GO:0090502	InterPro:IPR002156	InterPro:IPR036397	EnsemblPlantsGene:Os10g0458700
EnsemblPlants:Os10t0458700-02	PFAM:PF13456	PFscan:PS50879	PANTHER:PTHR33033	PANTHER:PTHR33033:SF50	UniProt:Q337N3
InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf	SUPFAM:SSF53098	UniParc:UPI00005E1F07	RefSeq:XP_015615040.1
RefSeq:XP_015615041.1	SEG:seg	:	:	:	:

Description

Hypothetical conserved gene. (Os10t0458700-01);Ribonuclease H domain containing protein. (Os10t0458700-02)

Coordinates

chr10:+:16840054..16845770

Molecular Weight (calculated)

35566.7 Da

IEP (calculated)

7.822

GRAVY (calculated)

-0.468

Length

323 amino acids

Sequence
(BLAST)

001: MEEGSNYYLV RKGEMVAVYK SLNDCQAQIC SSVSGPAASA YKGNSWSREK EEYLSSRGLS NATYVINAAE LREDLFGTLI PCTFQEITVS SSNQSALNHT
101: GVLNNTRYQP GAQSVDLNYD AVGSGQASAE HYSQRINQGY SVRGQAFNRL ESRPSSSSHF SPNNLDQSGT VDAQPLSKQY MVCLLHFDGA SKGNPGKAGA
201: GAVLMTEDGR VISRLREGLG IVTNNVAEYR GLILGLRYAI RHGFKKIIVY GDSQLVCYQV KGTWQTKNQN MMELCKEVRK LKENFVSFEI NHIRREWNAE
301: ADRQANIAIT LSSGVVSEER GDG

Best Arabidopsis Sequence Match ( AT3G01410.1 )
(BLAST)

001: MGSTMEDEKD AFYIVRKGDI IGVYRSLSEC QGQAGSSVSH PAMSVYKGYG WPKGAEDLLS SFGIKNALFS VNASHVKDDA FGKLIPCPVQ QPSSSQGESL
101: NKSSPSKRLQ DMGSGESGSF SPSPPQKQLK IENDMLRRIP SSLLTRTPIR QNDSCTIEFD GASKGNPGKA GAGAVLRASD NSVLFYLREG VGNATNNVAE
201: YRALLLGLRS ALDKGFKNVH VLGDSMLVCM QVQGAWKTNH PKMAELCKQA KELMNSFKTF DIKHIAREKN SEADKQANSA IFLADGQTQV ISGG

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JEB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.