CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G067140.3	Barley	nucleus	11.11	16.0
CDX74299	Canola	cytosol	12.96	14.29
Zm00001d049892_P001	Maize	mitochondrion	14.81	13.5
CDX91946	Canola	cytosol	12.04	13.4
KXG38410	Sorghum	cytosol	16.67	12.33
Zm00001d032798_P001	Maize	nucleus	16.67	12.33
GSMUA_Achr9P16450_001	Banana	nucleus	10.65	12.3
CDX74301	Canola	mitochondrion	10.19	12.09
KRG93392	Soybean	nucleus	8.33	11.76
TraesCS1B01G161700.1	Wheat	cytosol	14.35	11.65
GSMUA_Achr9P17780_001	Banana	mitochondrion	16.67	11.46
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	17.13	11.42
CDY71303	Canola	nucleus	10.65	11.33
KXG21007	Sorghum	mitochondrion	17.59	11.21
Os10t0458700-02	Rice	nucleus, plasma membrane	16.67	11.15
TraesCS5A01G355500.1	Wheat	plastid	17.59	11.14
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	16.67	11.11
TraesCS7A01G025300.1	Wheat	mitochondrion	17.59	10.95
TraesCS7D01G023200.1	Wheat	mitochondrion	17.59	10.89
Os08t0177800-00	Rice	mitochondrion	17.59	10.83
TraesCS4A01G463700.1	Wheat	plastid	17.13	10.66
CDY28678	Canola	nucleus	14.81	10.56
TraesCS5D01G363800.1	Wheat	golgi, mitochondrion	18.06	9.9
GSMUA_Achr9P16430_001	Banana	plasma membrane	7.87	9.39
Zm00001d035750_P001	Maize	plastid	12.96	9.24
CDY16247	Canola	cytosol, nucleus, plastid	12.04	6.7
CDY60797	Canola	golgi, nucleus, plastid	12.96	4.61

Protein Annotations

EnsemblPlants:CDY16246	EnsemblPlantsGene:GSBRNA2T00090711001	InterPro:DUF393	PANTHER:PTHR33639	PANTHER:PTHR33639:SF1	PFAM:PF04134
ProteinID:CDY16246	ProteinID:CDY16246.1	SEG:seg	UniParc:UPI0004EE9F19	UniProt:A0A078FT24	MapMan:35.1

Description

BnaA09g29800DBnaA09g29800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FT24]

Coordinates

chrLK032061:-:730516..732019

Molecular Weight (calculated)

24235.3 Da

IEP (calculated)

8.944

GRAVY (calculated)

-0.196

Length

216 amino acids

Sequence
(BLAST)

001: MLTKALRILK PRSNLGSSLH RRPVYSSSPS RRLTPGAVSR TTAGAAEIDA DEAVAYSDPT ESPTAMPIMM QAHLQPRVVV YDGVCPLCHG GVKWIIKADK
101: YRKIKFCCLQ SKTAEPYLTV SGVTKEDVEK RFLFIEGLGS YHQASTAALR VVSYLPLPYS ALKAFTIVPT PLRDSVYDYV ANNRYNWFGK AEDCLVLKEK
201: ELLERFIDRD ELIDRC

Best Arabidopsis Sequence Match ( AT1G24095.1 )
(BLAST)

001: MLTRALRILK PRLFLGSLLQ RRSVCFSAPS PAFSTGAISR TTAEIDADEV TACLDPAESV TKIPVIMPGN LQPRVVVYDG VCHLCHGGVK WIIKADKYRK
101: IKFCCLQSKA AEPYLEVSGV TREDVQKRFL FIEGLGFYHQ ASTAALRVVS YLPLPYSALN AFSIVPTPLR DSVYDYVAKN RYDWFGKAED CLVLNDKELL
201: ERFIDRDELI NRS

Arabidopsis Description

Putative thiol-disulfide oxidoreductase DCC [Source:UniProtKB/TrEMBL;Acc:Q9LR85]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.