Factsheet for TraesCS5D01G363800.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, mitochondrion

Predictor Summary:

extracellular 2
golgi 3
plasma membrane 2
endoplasmic reticulum 2
vacuole 2
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion
Any Predictor:	mitochondrion, nucleus, secretory
iPSORT:	secretory
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G355500.1	Wheat	plastid	76.4	88.27
TraesCS7D01G023200.1	Wheat	mitochondrion	69.04	77.94
HORVU5Hr1G067140.3	Barley	nucleus	27.66	72.67
Os08t0177800-00	Rice	mitochondrion	55.33	62.11
Zm00001d049892_P001	Maize	mitochondrion	37.06	61.6
KXG21007	Sorghum	mitochondrion	50.25	58.41
Zm00001d035750_P001	Maize	plastid	42.13	54.79
Solyc04g005010.2.1	Tomato	nucleus	35.79	49.65
PGSC0003DMT400040239	Potato	nucleus	34.77	47.4
PGSC0003DMT400085909	Potato	cytosol	13.71	47.37
Solyc02g087130.2.1	Tomato	nucleus	34.52	47.22
Solyc02g087140.2.1	Tomato	cytosol	34.52	47.06
CDX74299	Canola	cytosol	22.34	44.9
KRH18596	Soybean	nucleus	31.98	44.52
CDX74301	Canola	mitochondrion	20.56	44.51
KRG93392	Soybean	nucleus	17.26	44.44
PGSC0003DMT400042267	Potato	nucleus	33.76	43.89
Solyc01g008060.2.1	Tomato	nucleus	33.5	43.56
VIT_01s0026g00690.t01	Wine grape	mitochondrion	36.55	43.5
CDX91946	Canola	cytosol	21.32	43.3
AT3G01410.1	Thale cress	nucleus	31.98	42.86
KRG99252	Soybean	mitochondrion	37.82	42.33
CDY28678	Canola	nucleus	32.23	41.91
Bra040514.1-P	Field mustard	nucleus	32.23	41.91
KRH45746	Soybean	nucleus	37.31	41.29
GSMUA_Achr9P16430_001	Banana	plasma membrane	18.78	40.88
AT1G24090.1	Thale cress	mitochondrion, plastid	36.04	40.23
PGSC0003DMT400004838	Potato	extracellular	37.31	40.16
Solyc05g006090.2.1	Tomato	nucleus	36.8	39.51
CDY71303	Canola	nucleus	20.3	39.41
AT5G51080.1	Thale cress	mitochondrion	31.47	38.51
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	28.68	34.88
CDY16247	Canola	cytosol, nucleus, plastid	34.26	34.79
CDY60797	Canola	golgi, nucleus, plastid	33.76	21.91
CDY16246	Canola	mitochondrion	9.9	18.06
Bra024633.1-P	Field mustard	cytosol, nucleus, plastid	24.87	16.42

Protein Annotations

MapMan:15.3.7.2.2	Gene3D:3.30.420.10	Gene3D:3.40.970.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0004523	GO:GO:0005488	GO:GO:0016787	InterPro:IPR002156	InterPro:IPR036397
InterPro:IPR037056	PFAM:PF01693	PFAM:PF13456	PFscan:PS50879	PANTHER:PTHR33033	PANTHER:PTHR33033:SF30
InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf	InterPro:RNase_H1_N	InterPro:RNase_H1_N_sf	InterPro:Ribosomal_L9/RNase_H1_N
SUPFAM:SSF53098	SUPFAM:SSF55658	EnsemblPlantsGene:TraesCS5D01G363800	EnsemblPlants:TraesCS5D01G363800.1	TIGR:cd09279	SEG:seg

Description

No Description!

Coordinates

chr5D:-:441391145..441392329

Molecular Weight (calculated)

42900.6 Da

IEP (calculated)

9.457

GRAVY (calculated)

-0.288

Length

394 amino acids

Sequence
(BLAST)

001: MPSRPVVPAR PPLLRAACLL CMSARQSRHL LDPLLRAVCV LNDALFCWMS MRSCYFSSPF LCGISRAAWR HAVAGTPSLS GSHNLCHLPL RPPVPLIALG
101: LAERFFSSSS SKSKRPTKKS AAKKGAPTDS AAGGHPFYVV RKGHVIGIYK NLADCQAQVS NSVCDPSVTV YKGCSLRKET EEYLAKRGLK NALYSINAAD
201: ARDELFDGLA PCPFQQPDGT ATSSTPKRSQ EKETGQHPKA AEQEPLPDSH LSCILEFDGA CKGNPGKSGA GVIIRRPDGS VIAQLREGLG VATCNAAEYR
301: ALLLGLRYAA NKGFKYVRAQ GDSKLVCNQV QDLWRVRNDN MADLCKKAKE LKRKFLQFQI NHALRKFNAD ADAQANFAVE LPVGEVQEQS NFPC

Best Arabidopsis Sequence Match ( AT1G24090.1 )
(BLAST)

001: MNCLSHARSY IALGLLKRSS YVSSIPWNEC FFYMPSKSCL KPVAVSSVFG ICSVHSYSSR SKAVKSKMLS STVVSAVDKE KDAFFVVRKG DVIGIYKDLS
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA

Arabidopsis Description

RNase H domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7R5]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.