Factsheet for Solyc05g006090.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 9
nucleus 2

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040239	Potato	nucleus	75.48	95.85
Solyc04g005010.2.1	Tomato	nucleus	61.85	79.93
Solyc01g008060.2.1	Tomato	nucleus	63.22	76.57
VIT_01s0026g00690.t01	Wine grape	mitochondrion	48.23	53.47
Solyc02g087130.2.1	Tomato	nucleus	41.69	53.12
Solyc02g087140.2.1	Tomato	cytosol	41.42	52.6
KRG99252	Soybean	mitochondrion	49.32	51.42
KRH45746	Soybean	nucleus	49.86	51.4
GSMUA_Achr9P16450_001	Banana	nucleus	24.8	48.66
AT5G51080.1	Thale cress	mitochondrion	41.96	47.83
Zm00001d049892_P001	Maize	mitochondrion	29.97	46.41
AT1G24090.1	Thale cress	mitochondrion, plastid	44.14	45.89
KXG38410	Sorghum	cytosol	35.69	44.86
Zm00001d032798_P001	Maize	nucleus	35.69	44.86
HORVU5Hr1G067140.3	Barley	nucleus	17.71	43.33
GSMUA_Achr9P17780_001	Banana	mitochondrion	37.06	43.31
TraesCS4A01G463700.1	Wheat	plastid	40.87	43.23
TraesCS5A01G355500.1	Wheat	plastid	40.05	43.11
TraesCS7A01G025300.1	Wheat	mitochondrion	40.6	42.94
TraesCS7D01G023200.1	Wheat	mitochondrion	40.6	42.69
KXG21007	Sorghum	mitochondrion	38.42	41.59
Os08t0177800-00	Rice	mitochondrion	39.24	41.03
TraesCS1B01G161700.1	Wheat	cytosol	29.7	40.98
Zm00001d035750_P001	Maize	plastid	33.79	40.92
Os10t0458700-02	Rice	nucleus, plasma membrane	35.42	40.25
CDY16247	Canola	cytosol, nucleus, plastid	41.42	39.18
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	34.33	38.89
GSMUA_Achr9P16430_001	Banana	plasma membrane	19.07	38.67
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	34.06	38.58
TraesCS5D01G363800.1	Wheat	golgi, mitochondrion	39.51	36.8
CDY60797	Canola	golgi, nucleus, plastid	39.78	24.05
Bra024633.1-P	Field mustard	cytosol, nucleus, plastid	26.43	16.25

Protein Annotations

MapMan:15.3.7.2.2	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518
GO:GO:0004523	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0090502	InterPro:IPR002156	InterPro:IPR036397	UniProt:K4BWD6	PFAM:PF13456
PFscan:PS50879	PANTHER:PTHR33033	PANTHER:PTHR33033:SF30	InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf
SUPFAM:SSF53098	EnsemblPlantsGene:Solyc05g006090.2	EnsemblPlants:Solyc05g006090.2.1	UniParc:UPI00027671CB	SEG:seg	:

Description

No Description!

Coordinates

chr5:+:818986..824063

Molecular Weight (calculated)

40266.8 Da

IEP (calculated)

8.152

GRAVY (calculated)

-0.371

Length

367 amino acids

Sequence
(BLAST)

001: MNSLFHACST AILTRTSHLV VKSSICGFPS LSWKTSFGHA RIGKVDSNLY LNRVSVRCFS SKKHSGDSSP SQNSEFTTEM KEERDGFFVV RKGDLVGVYK
101: NLSDCQTQVG SSICDPPVSV YKGYAMPKDT EEYLLSCGLK NALYSIRAAD LTEDLFGTLV PCPFQQPSSS KSGTSDHLPK KRPQEAMWSE YADAVGSAVV
201: SNDSARKHVK LEQQKGDQIL ALPSGRSCTL EFDGASKGNP GQAGAGAVIR ADDGSMTLRL REGLGVATSN HAEYRAFILG LKHALREGFT SIRVQGDSKL
301: VCMQIQGLWK VKNQNIAMVF EQAKQLKERF LSFRIIHVLR ESNSDADQQA NLAVELPEGQ IQEEVEK

Best Arabidopsis Sequence Match ( AT1G24090.1 )
(BLAST)

001: MNCLSHARSY IALGLLKRSS YVSSIPWNEC FFYMPSKSCL KPVAVSSVFG ICSVHSYSSR SKAVKSKMLS STVVSAVDKE KDAFFVVRKG DVIGIYKDLS
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA

Arabidopsis Description

RNase H domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7R5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.