Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G363800.1 | Wheat | golgi, mitochondrion | 88.27 | 76.4 |
| TraesCS4A01G463700.1 | Wheat | plastid | 77.71 | 76.37 |
| TraesCS7A01G025300.1 | Wheat | mitochondrion | 77.13 | 75.79 |
| HORVU5Hr1G067140.3 | Barley | nucleus | 29.91 | 68.0 |
| Os08t0177800-00 | Rice | mitochondrion | 63.64 | 61.82 |
| Zm00001d049892_P001 | Maize | mitochondrion | 41.35 | 59.49 |
| KXG21007 | Sorghum | mitochondrion | 57.77 | 58.11 |
| Zm00001d035750_P001 | Maize | plastid | 46.33 | 52.15 |
| Solyc04g005010.2.1 | Tomato | nucleus | 41.06 | 49.3 |
| PGSC0003DMT400040239 | Potato | nucleus | 40.18 | 47.4 |
| PGSC0003DMT400085909 | Potato | cytosol | 15.54 | 46.49 |
| Solyc02g087130.2.1 | Tomato | nucleus | 38.71 | 45.83 |
| Solyc02g087140.2.1 | Tomato | cytosol | 38.71 | 45.67 |
| KRG93392 | Soybean | nucleus | 20.23 | 45.1 |
| Solyc01g008060.2.1 | Tomato | nucleus | 39.88 | 44.88 |
| PGSC0003DMT400042267 | Potato | nucleus | 39.88 | 44.88 |
| KRH18596 | Soybean | nucleus | 36.66 | 44.17 |
| CDX74301 | Canola | mitochondrion | 23.46 | 43.96 |
| CDX74299 | Canola | cytosol | 25.22 | 43.88 |
| VIT_01s0026g00690.t01 | Wine grape | mitochondrion | 41.64 | 42.9 |
| KRG99252 | Soybean | mitochondrion | 43.7 | 42.33 |
| CDX91946 | Canola | cytosol | 24.05 | 42.27 |
| AT1G24090.1 | Thale cress | mitochondrion, plastid | 42.82 | 41.36 |
| CDY28678 | Canola | nucleus | 36.66 | 41.25 |
| Bra040514.1-P | Field mustard | nucleus | 36.66 | 41.25 |
| AT3G01410.1 | Thale cress | nucleus | 35.48 | 41.16 |
| GSMUA_Achr9P16430_001 | Banana | plasma membrane | 21.7 | 40.88 |
| KRH45746 | Soybean | nucleus | 42.52 | 40.73 |
| AT5G51080.1 | Thale cress | mitochondrion | 38.12 | 40.37 |
| Solyc05g006090.2.1 | Tomato | nucleus | 43.11 | 40.05 |
| PGSC0003DMT400004838 | Potato | extracellular | 42.82 | 39.89 |
| CDY71303 | Canola | nucleus | 23.46 | 39.41 |
| CDY16247 | Canola | cytosol, nucleus, plastid | 40.76 | 35.82 |
| TraesCS1A01G144300.2 | Wheat | cytosol, nucleus, plastid | 32.84 | 34.57 |
| CDY60797 | Canola | golgi, nucleus, plastid | 39.59 | 22.24 |
| CDY16246 | Canola | mitochondrion | 11.14 | 17.59 |
| Bra024633.1-P | Field mustard | cytosol, nucleus, plastid | 29.62 | 16.92 |
Protein Annotations
| MapMan:15.3.7.2.2 | Gene3D:3.30.420.10 | Gene3D:3.40.970.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004523 | GO:GO:0005488 | GO:GO:0016787 | InterPro:IPR002156 | InterPro:IPR036397 |
| InterPro:IPR037056 | PFAM:PF01693 | PFAM:PF13456 | PFscan:PS50879 | PANTHER:PTHR33033 | PANTHER:PTHR33033:SF30 |
| InterPro:RNaseH-like_sf | InterPro:RNaseH_domain | InterPro:RNaseH_sf | InterPro:RNase_H1_N | InterPro:RNase_H1_N_sf | InterPro:Ribosomal_L9/RNase_H1_N |
| SUPFAM:SSF53098 | SUPFAM:SSF55658 | EnsemblPlantsGene:TraesCS5A01G355500 | EnsemblPlants:TraesCS5A01G355500.1 | TIGR:cd09279 | SEG:seg |
Description
No Description!
Coordinates
chr5A:-:558163931..558164956
Molecular Weight (calculated)
36774.8 Da
IEP (calculated)
9.398
GRAVY (calculated)
-0.357
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMRSCYSSS PFLRGISRAA WRHAVAGTPS LSGSHNLCHL PLRPRVPPIA LGLAGRFFSS SSSKSKRSTK KSAAKKDTPT GSAGGGQFYV VRKGDVIGIY
101: KDLADCQAQV SNSVCDPSAT VYKGCSLRKE TEEYLAKRGL KNALYSINAA DARDELFDAL APCPFQQPDG IASSALETGP SKKHPKVAEQ EPLPDSHLSC
201: ILEFDGACKG NPGKSGAGVI IRRPDGSVIA HLREGLGIAT CNAAEYHALL LGLRYAANKG FKYVRAQGDS KLVCNQVQDL WRVRNDNMAD LCKKAKELKG
301: KFLQFQINHA LRKFNADADA QANFAVELPV GEVQEQTNFP C
101: KDLADCQAQV SNSVCDPSAT VYKGCSLRKE TEEYLAKRGL KNALYSINAA DARDELFDAL APCPFQQPDG IASSALETGP SKKHPKVAEQ EPLPDSHLSC
201: ILEFDGACKG NPGKSGAGVI IRRPDGSVIA HLREGLGIAT CNAAEYHALL LGLRYAANKG FKYVRAQGDS KLVCNQVQDL WRVRNDNMAD LCKKAKELKG
301: KFLQFQINHA LRKFNADADA QANFAVELPV GEVQEQTNFP C
001: MNCLSHARSY IALGLLKRSS YVSSIPWNEC FFYMPSKSCL KPVAVSSVFG ICSVHSYSSR SKAVKSKMLS STVVSAVDKE KDAFFVVRKG DVIGIYKDLS
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA
Arabidopsis Description
RNase H domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7R5]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.