CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74301	Canola	mitochondrion	73.4	81.87
CDX91946	Canola	cytosol	55.66	58.25
CDX74299	Canola	cytosol	55.17	57.14
PGSC0003DMT400085909	Potato	cytosol	24.63	43.86
GSMUA_Achr9P16450_001	Banana	nucleus	35.96	39.04
HORVU5Hr1G067140.3	Barley	nucleus	28.08	38.0
CDY28678	Canola	nucleus	54.68	36.63
Solyc02g087130.2.1	Tomato	nucleus	41.87	29.51
Solyc02g087140.2.1	Tomato	cytosol	40.89	28.72
Zm00001d032798_P001	Maize	nucleus	40.39	28.08
KRH18596	Soybean	nucleus	38.92	27.92
Zm00001d049892_P001	Maize	mitochondrion	32.02	27.43
KXG38410	Sorghum	cytosol	39.41	27.4
Os10t0458700-02	Rice	nucleus, plasma membrane	39.41	24.77
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	39.41	24.69
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	38.92	24.38
TraesCS7A01G025300.1	Wheat	mitochondrion	40.89	23.92
GSMUA_Achr9P17780_001	Banana	mitochondrion	36.45	23.57
TraesCS5A01G355500.1	Wheat	plastid	39.41	23.46
TraesCS1B01G161700.1	Wheat	cytosol	30.54	23.31
TraesCS7D01G023200.1	Wheat	mitochondrion	39.9	23.21
Os08t0177800-00	Rice	mitochondrion	39.9	23.08
TraesCS4A01G463700.1	Wheat	plastid	39.41	23.05
KXG21007	Sorghum	mitochondrion	37.93	22.71
Zm00001d035750_P001	Maize	plastid	30.54	20.46
TraesCS5D01G363800.1	Wheat	golgi, mitochondrion	39.41	20.3
CDY16247	Canola	cytosol, nucleus, plastid	33.5	17.53
GSMUA_Achr9P16430_001	Banana	plasma membrane	10.84	12.15
CDY60797	Canola	golgi, nucleus, plastid	33.99	11.37
CDY16246	Canola	mitochondrion	11.33	10.65

Protein Annotations

MapMan:15.3.7.2.2	Gene3D:3.30.420.10	GO:A0A078JUT8	UniProt:A0A078JUT8	EnsemblPlants:CDY71303	ProteinID:CDY71303
ProteinID:CDY71303.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004523
GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0090502	EnsemblPlantsGene:GSBRNA2T00014023001	InterPro:IPR002156	InterPro:IPR036397	PFAM:PF13456	PFscan:PS50879
PANTHER:PTHR33033	PANTHER:PTHR33033:SF30	InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf	SUPFAM:SSF53098
UniParc:UPI0004EE1DA2	:	:	:	:	:

Description

BnaCnng72290DBnaCnng72290D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JUT8]

Coordinates

chrLK045315:-:83..1585

Molecular Weight (calculated)

22554.4 Da

IEP (calculated)

7.237

GRAVY (calculated)

-0.656

Length

203 amino acids

Sequence
(BLAST)

001: IRVDDLFINI NLRGRAHHPP LLHLFTPERH SESVRKLFAL LAMARREDRS HPKPQDSCTI EFDGASRGNP GRAGAGAVLR APDNTVLFRS REGLGSATNN
101: VAEYRALNLG LETALNNGFR NVRVQGDSQL VCKQQVQGEW ATRHPKMAEL CGQAHELMSQ FDSCDIQHEF NSEADAQASR ATNLAEGEYQ EDIAGRGYGR
201: RGY

Best Arabidopsis Sequence Match ( AT3G01410.1 )
(BLAST)

001: MGSTMEDEKD AFYIVRKGDI IGVYRSLSEC QGQAGSSVSH PAMSVYKGYG WPKGAEDLLS SFGIKNALFS VNASHVKDDA FGKLIPCPVQ QPSSSQGESL
101: NKSSPSKRLQ DMGSGESGSF SPSPPQKQLK IENDMLRRIP SSLLTRTPIR QNDSCTIEFD GASKGNPGKA GAGAVLRASD NSVLFYLREG VGNATNNVAE
201: YRALLLGLRS ALDKGFKNVH VLGDSMLVCM QVQGAWKTNH PKMAELCKQA KELMNSFKTF DIKHIAREKN SEADKQANSA IFLADGQTQV ISGG

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JEB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.