CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91946	Canola	cytosol	80.61	81.44
CDX74301	Canola	mitochondrion	56.63	60.99
CDY71303	Canola	nucleus	57.14	55.17
PGSC0003DMT400085909	Potato	cytosol	28.57	49.12
GSMUA_Achr9P16450_001	Banana	nucleus	40.31	42.25
HORVU5Hr1G067140.3	Barley	nucleus	31.12	40.67
CDY28678	Canola	nucleus	58.67	37.95
KRH18596	Soybean	nucleus	45.41	31.45
Solyc02g087130.2.1	Tomato	nucleus	44.39	30.21
Solyc02g087140.2.1	Tomato	cytosol	44.39	30.1
Zm00001d049892_P001	Maize	mitochondrion	34.69	28.69
Zm00001d032798_P001	Maize	nucleus	42.35	28.42
KXG38410	Sorghum	cytosol	41.84	28.08
TraesCS7A01G025300.1	Wheat	mitochondrion	45.92	25.94
KXG21007	Sorghum	mitochondrion	44.39	25.66
TraesCS7D01G023200.1	Wheat	mitochondrion	45.41	25.5
TraesCS4A01G463700.1	Wheat	plastid	44.9	25.36
Os08t0177800-00	Rice	mitochondrion	45.41	25.36
TraesCS5A01G355500.1	Wheat	plastid	43.88	25.22
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	40.82	24.69
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	40.82	24.69
Os10t0458700-02	Rice	nucleus, plasma membrane	40.31	24.46
TraesCS1B01G161700.1	Wheat	cytosol	33.16	24.44
GSMUA_Achr9P17780_001	Banana	mitochondrion	38.27	23.89
TraesCS5D01G363800.1	Wheat	golgi, mitochondrion	44.9	22.34
Zm00001d035750_P001	Maize	plastid	34.18	22.11
CDY16247	Canola	cytosol, nucleus, plastid	38.78	19.59
CDY16246	Canola	mitochondrion	14.29	12.96
CDY60797	Canola	golgi, nucleus, plastid	39.29	12.69
GSMUA_Achr9P16430_001	Banana	plasma membrane	10.2	11.05

Protein Annotations

MapMan:15.3.7.2.2	Gene3D:2.20.70.10	Gene3D:3.30.420.10	GO:A0A078CDR0	EnsemblPlants:CDX74299	ProteinID:CDX74299
ProteinID:CDX74299.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004523
GO:GO:0005488	GO:GO:0005515	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00112092001	InterPro:IPR001202	InterPro:IPR002156
InterPro:IPR036397	PFAM:PF00397	PFAM:PF13456	ScanProsite:PS01159	PFscan:PS50020	PFscan:PS50879
PANTHER:PTHR33033	PANTHER:PTHR33033:SF30	InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf	SMART:SM00456
SUPFAM:SSF51045	SUPFAM:SSF53098	UniParc:UPI0004EDEC76	InterPro:WW_dom	InterPro:WW_dom_sf	:

Description

BnaA03g27480D

Coordinates

chrLK031800:-:2117944..2119293

Molecular Weight (calculated)

22028.9 Da

IEP (calculated)

5.697

GRAVY (calculated)

-0.532

Length

196 amino acids

Sequence
(BLAST)

001: MAPRADHSLP KPWERLVDES GYYFYWNPET DETQYERPTC PPPRNFAQGS CTIEFDGASR GNPGRAGAGA VLRAPDNTVL FYLREGLGFA TNNVAEYRAL
101: ILGLECALSK GFRNVRVQGD SMLVCMQVQG AWRVQDPKMA QLCGEAKELM RQFTSFHIQH VPRELNSEAD AQANHAINLA ENETEEIAGG FRRRIY

Best Arabidopsis Sequence Match ( AT3G01410.1 )
(BLAST)

001: MGSTMEDEKD AFYIVRKGDI IGVYRSLSEC QGQAGSSVSH PAMSVYKGYG WPKGAEDLLS SFGIKNALFS VNASHVKDDA FGKLIPCPVQ QPSSSQGESL
101: NKSSPSKRLQ DMGSGESGSF SPSPPQKQLK IENDMLRRIP SSLLTRTPIR QNDSCTIEFD GASKGNPGKA GAGAVLRASD NSVLFYLREG VGNATNNVAE
201: YRALLLGLRS ALDKGFKNVH VLGDSMLVCM QVQGAWKTNH PKMAELCKQA KELMNSFKTF DIKHIAREKN SEADKQANSA IFLADGQTQV ISGG

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JEB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.