Factsheet for Solyc02g087140.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g087130.2.1	Tomato	nucleus	87.89	88.19
PGSC0003DMT400085909	Potato	cytosol	24.57	62.28
Solyc04g005010.2.1	Tomato	nucleus	51.9	52.82
AT3G01410.1	Thale cress	nucleus	53.63	52.72
KRH18596	Soybean	nucleus	50.52	51.59
Bra040514.1-P	Field mustard	nucleus	51.21	48.84
CDY28678	Canola	nucleus	51.21	48.84
GSMUA_Achr9P16450_001	Banana	nucleus	31.14	48.13
Solyc01g008060.2.1	Tomato	nucleus	50.17	47.85
HORVU5Hr1G067140.3	Barley	nucleus	23.53	45.33
Zm00001d049892_P001	Maize	mitochondrion	37.02	45.15
CDX74301	Canola	mitochondrion	28.37	45.05
CDX91946	Canola	cytosol	30.1	44.85
KXG38410	Sorghum	cytosol	44.98	44.52
CDX74299	Canola	cytosol	30.1	44.39
Zm00001d032798_P001	Maize	nucleus	43.94	43.49
Solyc05g006090.2.1	Tomato	nucleus	52.6	41.42
CDY71303	Canola	nucleus	28.72	40.89
TraesCS1B01G161700.1	Wheat	cytosol	37.37	40.6
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	45.33	40.43
TraesCS7D01G023200.1	Wheat	mitochondrion	48.79	40.4
Os10t0458700-02	Rice	nucleus, plasma membrane	44.98	40.25
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	44.98	40.12
TraesCS4A01G463700.1	Wheat	plastid	48.1	40.06
TraesCS7A01G025300.1	Wheat	mitochondrion	48.1	40.06
KXG21007	Sorghum	mitochondrion	46.37	39.53
Os08t0177800-00	Rice	mitochondrion	47.06	38.75
TraesCS5A01G355500.1	Wheat	plastid	45.67	38.71
Zm00001d035750_P001	Maize	plastid	40.14	38.28
GSMUA_Achr9P16430_001	Banana	plasma membrane	22.84	36.46
GSMUA_Achr9P17780_001	Banana	mitochondrion	39.45	36.31
TraesCS5D01G363800.1	Wheat	golgi, mitochondrion	47.06	34.52

Protein Annotations

MapMan:15.3.7.2.2	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518
GO:GO:0004523	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0090502	InterPro:IPR002156	InterPro:IPR036397	UniProt:K4BBM1	PFAM:PF13456
PFscan:PS50879	PANTHER:PTHR33033	PANTHER:PTHR33033:SF30	InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf
SUPFAM:SSF53098	EnsemblPlantsGene:Solyc02g087140.2	EnsemblPlants:Solyc02g087140.2.1	UniParc:UPI0002767D47	SEG:seg	:

Description

No Description!

Coordinates

chr2:+:49636911..49643682

Molecular Weight (calculated)

31836.3 Da

IEP (calculated)

7.991

GRAVY (calculated)

-0.262

Length

289 amino acids

Sequence
(BLAST)

001: MGDEKDAFYV VHKGDVIAVY KNLSDLQALL RSSVGEPAIS VYKGYHLAKQ SEEYLASHGL KNAMYSMDFS DVRDDLFGIL VPCPFRQPGS SKDKIMGKNL
101: PEKRMQMEVV ASPSFSAAGQ QKHATLDNCL EIPPISSYCP PYIQCSCILE FDGASKGNPG PAGAGAVLRA ADGSMVFRLR EGVGVATNNV AEYRGVILGL
201: KYALEKGFKH VKVKGDSKLV CMQTQGIWKC KNQNMAELSK IVKELKDHFV SFQINHIYRE FNTEADAQAN LAVYLKSGEF QVECDKKTT

Best Arabidopsis Sequence Match ( AT3G01410.1 )
(BLAST)

001: MGSTMEDEKD AFYIVRKGDI IGVYRSLSEC QGQAGSSVSH PAMSVYKGYG WPKGAEDLLS SFGIKNALFS VNASHVKDDA FGKLIPCPVQ QPSSSQGESL
101: NKSSPSKRLQ DMGSGESGSF SPSPPQKQLK IENDMLRRIP SSLLTRTPIR QNDSCTIEFD GASKGNPGKA GAGAVLRASD NSVLFYLREG VGNATNNVAE
201: YRALLLGLRS ALDKGFKNVH VLGDSMLVCM QVQGAWKTNH PKMAELCKQA KELMNSFKTF DIKHIAREKN SEADKQANSA IFLADGQTQV ISGG

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JEB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.