Factsheet for TraesCS1D01G143400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	97.53	97.53
KXG38410	Sorghum	cytosol	63.58	70.55
TraesCS1B01G161700.1	Wheat	cytosol	57.72	70.3
Os10t0458700-02	Rice	nucleus, plasma membrane	70.06	70.28
Zm00001d032798_P001	Maize	nucleus	63.27	70.21
PGSC0003DMT400085909	Potato	cytosol	18.21	51.75
KRG93392	Soybean	nucleus	22.22	47.06
Solyc02g087140.2.1	Tomato	cytosol	40.12	44.98
GSMUA_Achr9P16450_001	Banana	nucleus	25.93	44.92
Solyc04g005010.2.1	Tomato	nucleus	39.2	44.72
CDX74301	Canola	mitochondrion	25.0	44.51
Solyc02g087130.2.1	Tomato	nucleus	39.2	44.1
KRH18596	Soybean	nucleus	38.27	43.82
PGSC0003DMT400040239	Potato	nucleus	38.89	43.6
PGSC0003DMT400042267	Potato	nucleus	39.81	42.57
CDX91946	Canola	cytosol	25.31	42.27
Solyc01g008060.2.1	Tomato	nucleus	39.51	42.24
VIT_01s0026g00690.t01	Wine grape	mitochondrion	42.28	41.39
Bra040514.1-P	Field mustard	nucleus	38.58	41.25
CDY28678	Canola	nucleus	38.58	41.25
AT3G01410.1	Thale cress	nucleus	37.04	40.82
CDX74299	Canola	cytosol	24.69	40.82
CDY71303	Canola	nucleus	24.69	39.41
AT5G51080.1	Thale cress	mitochondrion	37.35	37.58
KRG99252	Soybean	mitochondrion	40.43	37.22
GSMUA_Achr9P17780_001	Banana	mitochondrion	35.49	36.62
KRH45746	Soybean	nucleus	39.81	36.24
PGSC0003DMT400004838	Potato	extracellular	39.81	35.25
AT1G24090.1	Thale cress	mitochondrion, plastid	37.96	34.84
TraesCS7D01G023200.1	Wheat	mitochondrion	37.35	34.67
Solyc05g006090.2.1	Tomato	nucleus	38.89	34.33
CDY16247	Canola	cytosol, nucleus, plastid	37.65	31.44
TraesCS5D01G363800.1	Wheat	golgi, mitochondrion	34.88	28.68
CDY60797	Canola	golgi, nucleus, plastid	38.58	20.59
CDY16246	Canola	mitochondrion	11.42	17.13
Bra024633.1-P	Field mustard	cytosol, nucleus, plastid	27.78	15.08

Protein Annotations

EnsemblPlants:TraesCS1D01G143400.1	EnsemblPlantsGene:TraesCS1D01G143400	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0004523	GO:GO:0005488	GO:GO:0016787	InterPro:IPR002156	InterPro:IPR036397
InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf	ncoils:Coil	PANTHER:PTHR33033	PANTHER:PTHR33033:SF50
PFAM:PF13456	PFscan:PS50879	SUPFAM:SSF53098	TIGR:cd09279	MapMan:15.3.7.2.2	:

Description

No Description!

Coordinates

chr1D:+:199062762..199068944

Molecular Weight (calculated)

35360.5 Da

IEP (calculated)

7.426

GRAVY (calculated)

-0.427

Length

324 amino acids

Sequence
(BLAST)

001: MEEGGDYYVV KKGDMVAVYK TLNDCQAQIC SSVSGPAASA YKGYCWSKEK AEYLSSRGLV NASYTISAAE LREDLLGALV PCTFQEVTAT SSNQRAPNRS
101: TLGSDIRYQP GIHNDIKYEP GTLPVDLNYS VAGSGQAQGY SVQEHAFSGQ EAKPRSSSYS SPNNLNHTGA FDAQPVSKQY MVCVVHFDGA SKGNPGKSGA
201: GAVLMTEDGR VISRLREGLG VATNNVAEYR GLILGLKYAI RLGFKRIKVY GDSQLVCYQV KGTWQAKKEN MMELCKEVRN LQENFISFEV HHVRREWNSE
301: ADRQANIAIT LASGAVSEER GDGF

Best Arabidopsis Sequence Match ( AT1G24090.1 )
(BLAST)

001: MNCLSHARSY IALGLLKRSS YVSSIPWNEC FFYMPSKSCL KPVAVSSVFG ICSVHSYSSR SKAVKSKMLS STVVSAVDKE KDAFFVVRKG DVIGIYKDLS
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA

Arabidopsis Description

RNase H domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7R5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.