CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18596	Soybean	nucleus	84.97	45.94
Zm00001d049892_P001	Maize	mitochondrion	49.02	31.65
HORVU5Hr1G067140.3	Barley	nucleus	28.1	28.67
Zm00001d032798_P001	Maize	nucleus	49.02	25.68
KXG38410	Sorghum	cytosol	49.02	25.68
GSMUA_Achr9P16450_001	Banana	nucleus	30.72	25.13
KRH45746	Soybean	nucleus	55.56	23.88
KRG99252	Soybean	mitochondrion	54.9	23.86
GSMUA_Achr9P16430_001	Banana	plasma membrane	28.1	23.76
Zm00001d035750_P001	Maize	plastid	46.41	23.43
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	47.06	22.22
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	47.06	22.22
Os10t0458700-02	Rice	nucleus, plasma membrane	46.41	21.98
KXG21007	Sorghum	mitochondrion	48.37	21.83
TraesCS4A01G463700.1	Wheat	plastid	49.02	21.61
Os08t0177800-00	Rice	mitochondrion	49.02	21.37
TraesCS7A01G025300.1	Wheat	mitochondrion	47.71	21.04
TraesCS7D01G023200.1	Wheat	mitochondrion	47.71	20.92
TraesCS5A01G355500.1	Wheat	plastid	45.1	20.23
GSMUA_Achr9P17780_001	Banana	mitochondrion	41.18	20.06
TraesCS1B01G161700.1	Wheat	cytosol	32.68	18.8
TraesCS5D01G363800.1	Wheat	golgi, mitochondrion	44.44	17.26
CDY16246	Canola	mitochondrion	11.76	8.33

Protein Annotations

Gene3D:3.30.420.10	MapMan:35.2	UniProt:A0A0R0EHL2	EMBL:ACUP02011551	EnsemblPlantsGene:GLYMA_19G012800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004523	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0090502	InterPro:IPR036397
EnsemblPlants:KRG93392	ProteinID:KRG93392	ProteinID:KRG93392.1	ProteinID:KRG93393.1	PFAM:PF13456	PIRSF:PIRSF037839
PANTHER:PTHR33033	PANTHER:PTHR33033:SF30	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	InterPro:RNase_H_bac	SUPFAM:SSF53098
UniParc:UPI0006EDA014	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:1222154..1227306

Molecular Weight (calculated)

16654.7 Da

IEP (calculated)

9.009

GRAVY (calculated)

-0.292

Length

153 amino acids

Sequence
(BLAST)

001: MAEEKDAFYV VRKGDVVGIY KSFSDIRPSL ASFVSSDPVS IYKGYSLPPK TEEYLVSPAD CKFDPYSSGG RAFNVSSSSR NLHGAIQFDT RLSCNLHFDG
101: ASKGNPGPAG AGAILRDGSK VYWLREGVGI QTNNVAEYRS LILGLKHALK ERI

Best Arabidopsis Sequence Match ( AT5G51080.3 )
(BLAST)

001: MSKSSVSVSD SDKEKDAFFV VRKGDIVGIY KDLIDCQAQV GSSVYDPPVS VYKGYSLLKD TEECLSTVGL KKPLYVFRAL DLKEDMFGAL TPCLFQDQLP
101: SASMSVEKLA ELEPSADTSY ETCIIEFDGA SKGNPGLSGA AAVLKTEDGS LIFKMRQGLG IATNNAAEYH GLILGLKHAI EKGYTKIKVK TDSKLVCMQM
201: KGQWKVNHEV LSKLHKEAKQ LSDKCLSFEI SHVLRSLNSD ADEQANMAAR LSEGEVEVA

Arabidopsis Description

AT5G51080 protein [Source:UniProtKB/TrEMBL;Acc:Q84TE0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.