Factsheet for Zm00001d032798_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG38410	Sorghum	cytosol	94.86	94.86
Os10t0458700-02	Rice	nucleus, plasma membrane	73.63	66.56
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	70.21	63.27
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	70.21	63.27
TraesCS1B01G161700.1	Wheat	cytosol	53.42	58.65
PGSC0003DMT400085909	Potato	cytosol	20.89	53.51
KRG93392	Soybean	nucleus	25.68	49.02
GSMUA_Achr9P16450_001	Banana	nucleus	30.14	47.06
KRH18596	Soybean	nucleus	44.52	45.94
Solyc04g005010.2.1	Tomato	nucleus	44.52	45.77
CDX74301	Canola	mitochondrion	28.42	45.6
PGSC0003DMT400040239	Potato	nucleus	44.86	45.33
Solyc02g087140.2.1	Tomato	cytosol	43.49	43.94
PGSC0003DMT400042267	Potato	nucleus	45.55	43.89
Solyc01g008060.2.1	Tomato	nucleus	45.21	43.56
Solyc02g087130.2.1	Tomato	nucleus	42.81	43.4
AT3G01410.1	Thale cress	nucleus	43.49	43.2
Zm00001d049892_P001	Maize	mitochondrion	34.93	43.04
CDX74299	Canola	cytosol	28.42	42.35
CDX91946	Canola	cytosol	28.08	42.27
CDY28678	Canola	nucleus	43.15	41.58
Bra040514.1-P	Field mustard	nucleus	43.15	41.58
VIT_01s0026g00690.t01	Wine grape	mitochondrion	45.89	40.48
CDY71303	Canola	nucleus	28.08	40.39
AT5G51080.1	Thale cress	mitochondrion	40.07	36.34
GSMUA_Achr9P17780_001	Banana	mitochondrion	39.04	36.31
KRH45746	Soybean	nucleus	44.18	36.24
PGSC0003DMT400004838	Potato	extracellular	45.21	36.07
KRG99252	Soybean	mitochondrion	43.15	35.8
Solyc05g006090.2.1	Tomato	nucleus	44.86	35.69
Zm00001d035750_P001	Maize	plastid	35.96	34.65
AT1G24090.1	Thale cress	mitochondrion, plastid	40.41	33.43
CDY16247	Canola	cytosol, nucleus, plastid	40.75	30.67
CDY60797	Canola	golgi, nucleus, plastid	39.73	19.11
CDY16246	Canola	mitochondrion	12.33	16.67
Bra024633.1-P	Field mustard	cytosol, nucleus, plastid	29.45	14.41

Protein Annotations

EntrezGene:100191864	MapMan:15.3.7.2.2	Gene3D:3.30.420.10	UniProt:B4FAG3	EMBL:BT034101	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004523	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0090502	InterPro:IPR002156
InterPro:IPR036397	ProteinID:ONM06068.1	PFAM:PF13456	PFscan:PS50879	PANTHER:PTHR33033	PANTHER:PTHR33033:SF50
InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf	SUPFAM:SSF53098	UniParc:UPI00017B607A	EnsemblPlantsGene:Zm00001d032798
EnsemblPlants:Zm00001d032798_P001	EnsemblPlants:Zm00001d032798_T001	:	:	:	:

Description

RNase H family protein

Coordinates

chr1:-:238443613..238471678

Molecular Weight (calculated)

31850.5 Da

IEP (calculated)

7.342

GRAVY (calculated)

-0.353

Length

292 amino acids

Sequence
(BLAST)

001: MEEGNDYYVV RKGDVVAVYK TLSDCQGQIC SSVSGPAASA YKGHSWSRGK EEYLSSRGLS DATYVINAAE LREDILGPLV PCSFQDILGS SSNQLAPNHI
101: GFHNVIASQT GAQYVDLNHE ARSSSSRHIS PANFNHTGTV DAQPISKQYM VGILHFDGAS KGNPGKAGAG AVLMTEDGRV ISRLREGLGV ATNNVAEYRG
201: LILGLKYAIR HGFKRIKVHG DSQLVCNQVN GVWQTKQPNM MELCTEARKL KENFHSFEII HVRREWNAEA DRQANIGITL ASGAVFEERG DI

Best Arabidopsis Sequence Match ( AT3G01410.1 )
(BLAST)

001: MGSTMEDEKD AFYIVRKGDI IGVYRSLSEC QGQAGSSVSH PAMSVYKGYG WPKGAEDLLS SFGIKNALFS VNASHVKDDA FGKLIPCPVQ QPSSSQGESL
101: NKSSPSKRLQ DMGSGESGSF SPSPPQKQLK IENDMLRRIP SSLLTRTPIR QNDSCTIEFD GASKGNPGKA GAGAVLRASD NSVLFYLREG VGNATNNVAE
201: YRALLLGLRS ALDKGFKNVH VLGDSMLVCM QVQGAWKTNH PKMAELCKQA KELMNSFKTF DIKHIAREKN SEADKQANSA IFLADGQTQV ISGG

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JEB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.