Factsheet for PGSC0003DMT400004838

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 7
nucleus 1
peroxisome 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

extracellular: 24773703

msms PMID: 24773703 doi

T Bengtsson, D Weighill, E Proux-Wéra, F Levander, S Resjö, DD Burra, LI Moushib, PE Hedley, E Liljeroth, D Jacobson, E Alexandersson, E Andreasson

Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Box 102, SE-230 53 Alnarp, Sweden. erik.alexandersson@slu.se.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g005010.2.1	Tomato	nucleus	73.5	94.72
PGSC0003DMT400040239	Potato	nucleus	61.48	77.85
PGSC0003DMT400042267	Potato	nucleus	60.38	72.94
PGSC0003DMT400085909	Potato	cytosol	18.03	57.89
VIT_01s0026g00690.t01	Wine grape	mitochondrion	50.55	55.89
KRG99252	Soybean	mitochondrion	51.64	53.69
KRH45746	Soybean	nucleus	51.91	53.37
GSMUA_Achr9P16450_001	Banana	nucleus	25.41	49.73
AT5G51080.1	Thale cress	mitochondrion	42.35	48.14
Zm00001d049892_P001	Maize	mitochondrion	31.15	48.1
HORVU5Hr1G067140.3	Barley	nucleus	19.13	46.67
AT1G24090.1	Thale cress	mitochondrion, plastid	44.81	46.46
TraesCS4A01G463700.1	Wheat	plastid	43.44	45.82
TraesCS7A01G025300.1	Wheat	mitochondrion	43.17	45.53
TraesCS7D01G023200.1	Wheat	mitochondrion	43.17	45.27
KXG38410	Sorghum	cytosol	36.07	45.21
Zm00001d032798_P001	Maize	nucleus	36.07	45.21
GSMUA_Achr9P17780_001	Banana	mitochondrion	38.52	44.9
TraesCS5A01G355500.1	Wheat	plastid	39.89	42.82
KXG21007	Sorghum	mitochondrion	39.62	42.77
Os08t0177800-00	Rice	mitochondrion	40.44	42.17
Zm00001d035750_P001	Maize	plastid	34.7	41.91
Os10t0458700-02	Rice	nucleus, plasma membrane	35.52	40.25
TraesCS1B01G161700.1	Wheat	cytosol	29.23	40.23
CDY16247	Canola	cytosol, nucleus, plastid	42.35	39.95
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	35.25	39.81
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	34.97	39.51
GSMUA_Achr9P16430_001	Banana	plasma membrane	19.13	38.67
TraesCS5D01G363800.1	Wheat	golgi, mitochondrion	40.16	37.31
CDY60797	Canola	golgi, nucleus, plastid	40.71	24.55
Bra024633.1-P	Field mustard	cytosol, nucleus, plastid	26.5	16.25

Protein Annotations

EntrezGene:102591092	MapMan:15.3.7.2.2	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0004523	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0090502	InterPro:IPR002156	InterPro:IPR036397	UniProt:M0ZP18
PFAM:PF13456	EnsemblPlantsGene:PGSC0003DMG400001921	PGSC:PGSC0003DMG400001921	EnsemblPlants:PGSC0003DMT400004838	PFscan:PS50879	PANTHER:PTHR33033
PANTHER:PTHR33033:SF30	InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf	SUPFAM:SSF53098	UniParc:UPI0002969C4E
RefSeq:XP_006363530.1	SEG:seg	:	:	:	:

Description

Nuclease [Source:PGSC_GENE;Acc:PGSC0003DMG400001921]

Coordinates

chr00:-:12328346..12336797

Molecular Weight (calculated)

40118.7 Da

IEP (calculated)

8.530

GRAVY (calculated)

-0.293

Length

366 amino acids

Sequence
(BLAST)

001: MNILFNACSA AIFTRTSRRA VKSSIGAFSA LSWKTGVGFT ATRKVDFDLF FKQICVRCYS SKKFRVESSS SQKSDLTPQM KEDRDGFFVV RKGNLVGVYK
101: NLSDCQTQVG SSICDPPVSV YKGYAMPKDT EEYLLSCGLK NALYSIRAAD LTEDLFGTLV PCPFQQPSSS KGGIPEHMTK KRSQDVMWSE YTDAAGSAVI
201: SNDDSLRKHV KLDDHKGDQA LPSGQSCTLE FDGASKGNPG LAGAGAVLRA DDGSFICRLR EGLGVATNNA AEYRAIILGL NYALSKGFTS IRVQGDSKLV
301: CMQIQGLWKV KNQNISTLYE QAKQLKDRFL SFRIIHVLRE SNSDADAQAN IAVELANGQI QEEIEK

Best Arabidopsis Sequence Match ( AT1G24090.1 )
(BLAST)

001: MNCLSHARSY IALGLLKRSS YVSSIPWNEC FFYMPSKSCL KPVAVSSVFG ICSVHSYSSR SKAVKSKMLS STVVSAVDKE KDAFFVVRKG DVIGIYKDLS
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA

Arabidopsis Description

RNase H domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7R5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.