Factsheet for VIT_01s0026g00690.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g005010.2.1	Tomato	nucleus	52.87	61.62
PGSC0003DMT400040239	Potato	nucleus	52.87	60.55
PGSC0003DMT400042267	Potato	nucleus	51.06	55.78
Solyc01g008060.2.1	Tomato	nucleus	50.76	55.45
GSMUA_Achr9P16450_001	Banana	nucleus	29.0	51.34
PGSC0003DMT400004838	Potato	extracellular	55.89	50.55
KRG99252	Soybean	mitochondrion	52.87	49.72
KRH45746	Soybean	nucleus	52.87	49.16
Zm00001d049892_P001	Maize	mitochondrion	35.05	48.95
Solyc05g006090.2.1	Tomato	nucleus	53.47	48.23
AT5G51080.1	Thale cress	mitochondrion	45.62	46.89
AT1G24090.1	Thale cress	mitochondrion, plastid	49.24	46.18
KXG38410	Sorghum	cytosol	40.48	45.89
Zm00001d032798_P001	Maize	nucleus	40.48	45.89
TraesCS1B01G161700.1	Wheat	cytosol	35.95	44.74
KXG21007	Sorghum	mitochondrion	45.02	43.95
HORVU5Hr1G067140.3	Barley	nucleus	19.64	43.33
Os08t0177800-00	Rice	mitochondrion	45.32	42.73
TraesCS4A01G463700.1	Wheat	plastid	44.71	42.65
TraesCS7A01G025300.1	Wheat	mitochondrion	44.71	42.65
TraesCS7D01G023200.1	Wheat	mitochondrion	44.71	42.41
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	41.39	42.28
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	41.39	42.28
TraesCS5A01G355500.1	Wheat	plastid	42.9	41.64
GSMUA_Achr9P17780_001	Banana	mitochondrion	39.27	41.4
Os10t0458700-02	Rice	nucleus, plasma membrane	40.18	41.18
GSMUA_Achr9P16430_001	Banana	plasma membrane	22.05	40.33
CDY16247	Canola	cytosol, nucleus, plastid	46.53	39.69
Zm00001d035750_P001	Maize	plastid	36.25	39.6
TraesCS5D01G363800.1	Wheat	golgi, mitochondrion	43.5	36.55
CDY60797	Canola	golgi, nucleus, plastid	46.22	25.21
Bra024633.1-P	Field mustard	cytosol, nucleus, plastid	30.82	17.09

Protein Annotations

MapMan:15.3.7.2.2	Gene3D:3.30.420.10	Gene3D:3.40.970.10	ProteinID:CCB56634	ProteinID:CCB56634.1	UniProt:F6HPK6
EMBL:FN596002	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004523
GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0090502	InterPro:IPR002156	InterPro:IPR036397	InterPro:IPR037056	PFAM:PF01693	PFAM:PF13456
PFscan:PS50879	PANTHER:PTHR33033	PANTHER:PTHR33033:SF30	InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf
InterPro:RNase_H1_N	InterPro:RNase_H1_N_sf	InterPro:Ribosomal_L9/RNase_H1_N	SUPFAM:SSF53098	SUPFAM:SSF55658	UniParc:UPI0002108841
ArrayExpress:VIT_01s0026g00690	EnsemblPlantsGene:VIT_01s0026g00690	EnsemblPlants:VIT_01s0026g00690.t01	:	:	:

Description

No Description!

Coordinates

chr1:-:9458022..9476054

Molecular Weight (calculated)

36400.8 Da

IEP (calculated)

8.684

GRAVY (calculated)

-0.240

Length

331 amino acids

Sequence
(BLAST)

001: MLTRFRVQSY SSRGRGAKSQ SQKLESKPVM EEEKDAFFVV RKGDVVGVYK TFSDCQAQVG SSICDPPVSV YKGYYLPKDT EEYLVSRGLR NALYTIRAAD
101: LKEDLFGKLM PCAFQQTASS KGEILSKDLP RESSQEVMGL EIVGAVESRP ITTDPLKEHI KLDRVEAQAL FSDCRSCVVE FDGASKGNPG PAGAAAVLRS
201: DSGRVICRVR EGLGLATNNV AEYQAMILGL KYALKKGYTS IRVQGDSKLV CMQVQGLWKA RNKNMSILCK EAKKLKNEFL SVEINHVLRG LNSEADAQAN
301: LAVHLAVGEV QEVHGLVFVD QNLKGVYVYN A

Best Arabidopsis Sequence Match ( AT1G24090.1 )
(BLAST)

001: MNCLSHARSY IALGLLKRSS YVSSIPWNEC FFYMPSKSCL KPVAVSSVFG ICSVHSYSSR SKAVKSKMLS STVVSAVDKE KDAFFVVRKG DVIGIYKDLS
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA

Arabidopsis Description

RNase H domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7R5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.