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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • plastid 1
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400042267 Potato nucleus 98.68 98.68
Solyc04g005010.2.1 Tomato nucleus 71.95 76.76
Solyc05g006090.2.1 Tomato nucleus 76.57 63.22
VIT_01s0026g00690.t01 Wine grape mitochondrion 55.45 50.76
Solyc02g087140.2.1 Tomato cytosol 47.85 50.17
Solyc02g087130.2.1 Tomato nucleus 47.19 49.65
KRG99252 Soybean mitochondrion 57.1 49.15
KRH45746 Soybean nucleus 57.43 48.88
GSMUA_Achr9P16450_001 Banana nucleus 28.71 46.52
Zm00001d049892_P001 Maize mitochondrion 35.64 45.57
KXG38410 Sorghum cytosol 43.56 45.21
Zm00001d032798_P001 Maize nucleus 43.56 45.21
HORVU5Hr1G067140.3 Barley nucleus 22.11 44.67
AT5G51080.1 Thale cress mitochondrion 45.87 43.17
AT1G24090.1 Thale cress mitochondrion, plastid 48.51 41.64
TraesCS4A01G463700.1 Wheat plastid 46.86 40.92
TraesCS7D01G023200.1 Wheat mitochondrion 46.86 40.69
TraesCS7A01G025300.1 Wheat mitochondrion 46.53 40.63
TraesCS1B01G161700.1 Wheat cytosol 35.64 40.6
Os10t0458700-02 Rice nucleus, plasma membrane 43.23 40.56
TraesCS5A01G355500.1 Wheat plastid 44.88 39.88
TraesCS1A01G144300.2 Wheat cytosol, nucleus, plastid 42.24 39.51
TraesCS1D01G143400.1 Wheat cytosol, nucleus, plastid 42.24 39.51
KXG21007 Sorghum mitochondrion 43.89 39.23
GSMUA_Achr9P17780_001 Banana mitochondrion 39.93 38.53
GSMUA_Achr9P16430_001 Banana plasma membrane 22.77 38.12
Zm00001d035750_P001 Maize plastid 37.95 37.95
Os08t0177800-00 Rice mitochondrion 43.89 37.89
CDY16247 Canola cytosol, nucleus, plastid 45.54 35.57
TraesCS5D01G363800.1 Wheat golgi, mitochondrion 43.56 33.5
CDY60797 Canola golgi, nucleus, plastid 43.89 21.91
Bra024633.1-P Field mustard cytosol, nucleus, plastid 27.72 14.07
Protein Annotations
MapMan:15.3.7.2.2Gene3D:3.30.420.10GO:GO:0003674GO:GO:0003676GO:GO:0003824GO:GO:0004518
GO:GO:0004523GO:GO:0005488GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0016787GO:GO:0090502InterPro:IPR002156InterPro:IPR036397UniProt:K4AT04PFAM:PF13456
PFscan:PS50879PANTHER:PTHR33033PANTHER:PTHR33033:SF30InterPro:RNaseH-like_sfInterPro:RNaseH_domainInterPro:RNaseH_sf
SUPFAM:SSF53098EnsemblPlantsGene:Solyc01g008060.2EnsemblPlants:Solyc01g008060.2.1UniParc:UPI0002762CFBSEG:seg:
Description
No Description!
Coordinates
chr1:+:2202763..2211056
Molecular Weight (calculated)
33127.3 Da
IEP (calculated)
7.730
GRAVY (calculated)
-0.423
Length
303 amino acids
Sequence
(BLAST)
001: MKEDRDGFFV VKKGDIVGVY RNLGDCQTQV GSSICDPPVS VYKGYSMPKD TEEYLLSCGL KNALYSIRAA DLTESLFGAL VPCPFQHQSS SKGGASEHTP
101: KKRSQEAMWS EYADAVGSVV ASNDSLRKHI KLEPPKGDQQ ALSSGVYAVG MKEADRGYPQ QRSCTLEFDG TSKGNPGQAG AGAVVRADDG SLICRLREGL
201: GIATTSVAEY RGFILGLKYA HSKGFTSIRA QGDSKLVCMQ IQGLWKVKNQ NISTLFQQAK QLKDRFFSFR IIHVLRESNC DADQQANLAI ELPDGHVQEE
301: IEK
Best Arabidopsis Sequence Match ( AT1G24090.1 )
(BLAST)
001: MNCLSHARSY IALGLLKRSS YVSSIPWNEC FFYMPSKSCL KPVAVSSVFG ICSVHSYSSR SKAVKSKMLS STVVSAVDKE KDAFFVVRKG DVIGIYKDLS
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA
Arabidopsis Description
RNase H domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7R5]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.