Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400042267 | Potato | nucleus | 98.68 | 98.68 |
Solyc04g005010.2.1 | Tomato | nucleus | 71.95 | 76.76 |
Solyc05g006090.2.1 | Tomato | nucleus | 76.57 | 63.22 |
VIT_01s0026g00690.t01 | Wine grape | mitochondrion | 55.45 | 50.76 |
Solyc02g087140.2.1 | Tomato | cytosol | 47.85 | 50.17 |
Solyc02g087130.2.1 | Tomato | nucleus | 47.19 | 49.65 |
KRG99252 | Soybean | mitochondrion | 57.1 | 49.15 |
KRH45746 | Soybean | nucleus | 57.43 | 48.88 |
GSMUA_Achr9P16450_001 | Banana | nucleus | 28.71 | 46.52 |
Zm00001d049892_P001 | Maize | mitochondrion | 35.64 | 45.57 |
KXG38410 | Sorghum | cytosol | 43.56 | 45.21 |
Zm00001d032798_P001 | Maize | nucleus | 43.56 | 45.21 |
HORVU5Hr1G067140.3 | Barley | nucleus | 22.11 | 44.67 |
AT5G51080.1 | Thale cress | mitochondrion | 45.87 | 43.17 |
AT1G24090.1 | Thale cress | mitochondrion, plastid | 48.51 | 41.64 |
TraesCS4A01G463700.1 | Wheat | plastid | 46.86 | 40.92 |
TraesCS7D01G023200.1 | Wheat | mitochondrion | 46.86 | 40.69 |
TraesCS7A01G025300.1 | Wheat | mitochondrion | 46.53 | 40.63 |
TraesCS1B01G161700.1 | Wheat | cytosol | 35.64 | 40.6 |
Os10t0458700-02 | Rice | nucleus, plasma membrane | 43.23 | 40.56 |
TraesCS5A01G355500.1 | Wheat | plastid | 44.88 | 39.88 |
TraesCS1A01G144300.2 | Wheat | cytosol, nucleus, plastid | 42.24 | 39.51 |
TraesCS1D01G143400.1 | Wheat | cytosol, nucleus, plastid | 42.24 | 39.51 |
KXG21007 | Sorghum | mitochondrion | 43.89 | 39.23 |
GSMUA_Achr9P17780_001 | Banana | mitochondrion | 39.93 | 38.53 |
GSMUA_Achr9P16430_001 | Banana | plasma membrane | 22.77 | 38.12 |
Zm00001d035750_P001 | Maize | plastid | 37.95 | 37.95 |
Os08t0177800-00 | Rice | mitochondrion | 43.89 | 37.89 |
CDY16247 | Canola | cytosol, nucleus, plastid | 45.54 | 35.57 |
TraesCS5D01G363800.1 | Wheat | golgi, mitochondrion | 43.56 | 33.5 |
CDY60797 | Canola | golgi, nucleus, plastid | 43.89 | 21.91 |
Bra024633.1-P | Field mustard | cytosol, nucleus, plastid | 27.72 | 14.07 |
Protein Annotations
MapMan:15.3.7.2.2 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004518 |
GO:GO:0004523 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
GO:GO:0016787 | GO:GO:0090502 | InterPro:IPR002156 | InterPro:IPR036397 | UniProt:K4AT04 | PFAM:PF13456 |
PFscan:PS50879 | PANTHER:PTHR33033 | PANTHER:PTHR33033:SF30 | InterPro:RNaseH-like_sf | InterPro:RNaseH_domain | InterPro:RNaseH_sf |
SUPFAM:SSF53098 | EnsemblPlantsGene:Solyc01g008060.2 | EnsemblPlants:Solyc01g008060.2.1 | UniParc:UPI0002762CFB | SEG:seg | : |
Description
No Description!
Coordinates
chr1:+:2202763..2211056
Molecular Weight (calculated)
33127.3 Da
IEP (calculated)
7.730
GRAVY (calculated)
-0.423
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MKEDRDGFFV VKKGDIVGVY RNLGDCQTQV GSSICDPPVS VYKGYSMPKD TEEYLLSCGL KNALYSIRAA DLTESLFGAL VPCPFQHQSS SKGGASEHTP
101: KKRSQEAMWS EYADAVGSVV ASNDSLRKHI KLEPPKGDQQ ALSSGVYAVG MKEADRGYPQ QRSCTLEFDG TSKGNPGQAG AGAVVRADDG SLICRLREGL
201: GIATTSVAEY RGFILGLKYA HSKGFTSIRA QGDSKLVCMQ IQGLWKVKNQ NISTLFQQAK QLKDRFFSFR IIHVLRESNC DADQQANLAI ELPDGHVQEE
301: IEK
101: KKRSQEAMWS EYADAVGSVV ASNDSLRKHI KLEPPKGDQQ ALSSGVYAVG MKEADRGYPQ QRSCTLEFDG TSKGNPGQAG AGAVVRADDG SLICRLREGL
201: GIATTSVAEY RGFILGLKYA HSKGFTSIRA QGDSKLVCMQ IQGLWKVKNQ NISTLFQQAK QLKDRFFSFR IIHVLRESNC DADQQANLAI ELPDGHVQEE
301: IEK
001: MNCLSHARSY IALGLLKRSS YVSSIPWNEC FFYMPSKSCL KPVAVSSVFG ICSVHSYSSR SKAVKSKMLS STVVSAVDKE KDAFFVVRKG DVIGIYKDLS
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA
101: DCQAQVGSSV FDLPVSVYKG YSLPKDTEEY LSSVGLKKPL YSLRASDLKD DMFGALTPCL FQEPAPCTVK VSEDETTSET KSKDDKKDQL PSASISYDPL
201: EKLSKVEPSA YISDETCFIE FDGASKGNPG LSGAAAVLKT EDGSLICRVR QGLGIATNNA AEYHALILGL KYAIEKGYKN IKVKGDSKLV CMQIKGQWKV
301: NHEVLAKLHK EAKLLCNKCV SFEISHVLRN LNADADEQAN LAVRLPEGEV EVA
Arabidopsis Description
RNase H domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7R5]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.