CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032798_P001	Maize	nucleus	94.86	94.86
Os10t0458700-02	Rice	nucleus, plasma membrane	73.97	66.87
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	70.89	63.89
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	70.55	63.58
TraesCS1B01G161700.1	Wheat	cytosol	54.11	59.4
PGSC0003DMT400085909	Potato	cytosol	21.23	54.39
KRG93392	Soybean	nucleus	25.68	49.02
Solyc04g005010.2.1	Tomato	nucleus	44.52	45.77
KRH18596	Soybean	nucleus	44.18	45.58
GSMUA_Achr9P16450_001	Banana	nucleus	29.11	45.45
PGSC0003DMT400040239	Potato	nucleus	44.86	45.33
Solyc02g087140.2.1	Tomato	cytosol	44.52	44.98
CDX74301	Canola	mitochondrion	27.74	44.51
Solyc02g087130.2.1	Tomato	nucleus	43.84	44.44
PGSC0003DMT400042267	Potato	nucleus	45.55	43.89
Solyc01g008060.2.1	Tomato	nucleus	45.21	43.56
AT3G01410.1	Thale cress	nucleus	42.81	42.52
CDX91946	Canola	cytosol	28.08	42.27
CDX74299	Canola	cytosol	28.08	41.84
CDY28678	Canola	nucleus	43.15	41.58
Bra040514.1-P	Field mustard	nucleus	43.15	41.58
VIT_01s0026g00690.t01	Wine grape	mitochondrion	45.89	40.48
CDY71303	Canola	nucleus	27.4	39.41
AT5G51080.1	Thale cress	mitochondrion	40.75	36.96
KRH45746	Soybean	nucleus	44.52	36.52
KXG21007	Sorghum	mitochondrion	42.12	36.28
KRG99252	Soybean	mitochondrion	43.49	36.08
PGSC0003DMT400004838	Potato	extracellular	45.21	36.07
GSMUA_Achr9P17780_001	Banana	mitochondrion	38.7	35.99
Solyc05g006090.2.1	Tomato	nucleus	44.86	35.69
AT1G24090.1	Thale cress	mitochondrion, plastid	41.1	33.99
CDY16247	Canola	cytosol, nucleus, plastid	41.44	31.19
CDY60797	Canola	golgi, nucleus, plastid	40.07	19.28
CDY16246	Canola	mitochondrion	12.33	16.67
Bra024633.1-P	Field mustard	cytosol, nucleus, plastid	30.14	14.74

Protein Annotations

MapMan:15.3.7.2.2	Gene3D:3.30.420.10	UniProt:A0A1B6QKH8	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0004523	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0090502	InterPro:IPR002156	InterPro:IPR036397	EnsemblPlants:KXG38410
ProteinID:KXG38410	ProteinID:KXG38410.1	PFAM:PF01693	PFAM:PF13456	PFscan:PS50879	PANTHER:PTHR33033
PANTHER:PTHR33033:SF50	InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf	InterPro:RNase_H1_N	EnsemblPlantsGene:SORBI_3001G229300
SUPFAM:SSF53098	UniParc:UPI00081AB5DB	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:22051321..22057383

Molecular Weight (calculated)

31900.7 Da

IEP (calculated)

7.952

GRAVY (calculated)

-0.323

Length

292 amino acids

Sequence
(BLAST)

001: MEEGSDYYVV RKGDVVAVYK TLSDCQAQIC SSVSGPAASA YKGHSWSRGK EEYLSSWGLS HATYVINAAE LREDVLGPLV PCSFQDILGS SSNQQAPNHI
101: GFHNVVASQT GAQYVDLNHE ARSSSFRHIS PANFNRTGAV DAQPISKQYM VGILHFDGAS KGNPGKAGAG AVLMTEDGRV ISRLREGLGV ATNNVAEYRG
201: LILGLKYAIR HGFKRIKVHG DSQLVCNQVN GVWQVKQPNM IELCKEVRKL KENFHSFEII HVRREWNAEA DRQANIGITL ASGAVSEERG DI

Best Arabidopsis Sequence Match ( AT3G01410.1 )
(BLAST)

001: MGSTMEDEKD AFYIVRKGDI IGVYRSLSEC QGQAGSSVSH PAMSVYKGYG WPKGAEDLLS SFGIKNALFS VNASHVKDDA FGKLIPCPVQ QPSSSQGESL
101: NKSSPSKRLQ DMGSGESGSF SPSPPQKQLK IENDMLRRIP SSLLTRTPIR QNDSCTIEFD GASKGNPGKA GAGAVLRASD NSVLFYLREG VGNATNNVAE
201: YRALLLGLRS ALDKGFKNVH VLGDSMLVCM QVQGAWKTNH PKMAELCKQA KELMNSFKTF DIKHIAREKN SEADKQANSA IFLADGQTQV ISGG

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JEB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.