Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040514.1-P | Field mustard | nucleus | 74.83 | 72.61 |
| CDY28678 | Canola | nucleus | 74.83 | 72.61 |
| Solyc02g087140.2.1 | Tomato | cytosol | 52.72 | 53.63 |
| Solyc02g087130.2.1 | Tomato | nucleus | 51.7 | 52.78 |
| PGSC0003DMT400085909 | Potato | cytosol | 20.07 | 51.75 |
| KRH18596 | Soybean | nucleus | 45.92 | 47.7 |
| GSMUA_Achr9P16450_001 | Banana | nucleus | 29.59 | 46.52 |
| HORVU5Hr1G067140.3 | Barley | nucleus | 23.13 | 45.33 |
| Zm00001d032798_P001 | Maize | nucleus | 43.2 | 43.49 |
| KXG38410 | Sorghum | cytosol | 42.52 | 42.81 |
| Zm00001d049892_P001 | Maize | mitochondrion | 33.67 | 41.77 |
| Os10t0458700-02 | Rice | nucleus, plasma membrane | 43.54 | 39.63 |
| GSMUA_Achr9P16430_001 | Banana | plasma membrane | 23.81 | 38.67 |
| GSMUA_Achr9P17780_001 | Banana | mitochondrion | 41.16 | 38.53 |
| AT1G24090.1 | Thale cress | mitochondrion, plastid | 45.92 | 38.24 |
| TraesCS1A01G144300.2 | Wheat | cytosol, nucleus, plastid | 41.16 | 37.35 |
| TraesCS1D01G143400.1 | Wheat | cytosol, nucleus, plastid | 40.82 | 37.04 |
| TraesCS7D01G023200.1 | Wheat | mitochondrion | 43.88 | 36.96 |
| TraesCS7A01G025300.1 | Wheat | mitochondrion | 43.54 | 36.89 |
| TraesCS1B01G161700.1 | Wheat | cytosol | 33.33 | 36.84 |
| TraesCS4A01G463700.1 | Wheat | plastid | 43.2 | 36.6 |
| AT5G51080.1 | Thale cress | mitochondrion | 39.8 | 36.34 |
| KXG21007 | Sorghum | mitochondrion | 41.16 | 35.69 |
| Zm00001d035750_P001 | Maize | plastid | 36.73 | 35.64 |
| TraesCS5A01G355500.1 | Wheat | plastid | 41.16 | 35.48 |
| Os08t0177800-00 | Rice | mitochondrion | 41.5 | 34.76 |
| TraesCS5D01G363800.1 | Wheat | golgi, mitochondrion | 42.86 | 31.98 |
Protein Annotations
| MapMan:15.3.7.2.2 | Gene3D:3.30.420.10 | EntrezGene:821319 | UniProt:A0A178VFT3 | ProteinID:AEE73662.1 | ProteinID:AEE73663.1 |
| ArrayExpress:AT3G01410 | EnsemblPlantsGene:AT3G01410 | RefSeq:AT3G01410 | TAIR:AT3G01410 | RefSeq:AT3G01410-TAIR-G | EnsemblPlants:AT3G01410.1 |
| TAIR:AT3G01410.1 | Unigene:At.43322 | UniProt:F4JEB4 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004523 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0016787 | GO:GO:0090502 | InterPro:IPR002156 | InterPro:IPR036397 | RefSeq:NP_001078087.1 | RefSeq:NP_186790.2 |
| ProteinID:OAP04538.1 | PFAM:PF13456 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50879 | PANTHER:PTHR33033 |
| PANTHER:PTHR33033:SF30 | InterPro:RNaseH-like_sf | InterPro:RNaseH_domain | InterPro:RNaseH_sf | SUPFAM:SSF53098 | UniParc:UPI0000196AB6 |
| SEG:seg | : | : | : | : | : |
Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JEB4]
Coordinates
chr3:-:153343..155657
Molecular Weight (calculated)
31672.6 Da
IEP (calculated)
8.931
GRAVY (calculated)
-0.423
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSTMEDEKD AFYIVRKGDI IGVYRSLSEC QGQAGSSVSH PAMSVYKGYG WPKGAEDLLS SFGIKNALFS VNASHVKDDA FGKLIPCPVQ QPSSSQGESL
101: NKSSPSKRLQ DMGSGESGSF SPSPPQKQLK IENDMLRRIP SSLLTRTPIR QNDSCTIEFD GASKGNPGKA GAGAVLRASD NSVLFYLREG VGNATNNVAE
201: YRALLLGLRS ALDKGFKNVH VLGDSMLVCM QVQGAWKTNH PKMAELCKQA KELMNSFKTF DIKHIAREKN SEADKQANSA IFLADGQTQV ISGG
101: NKSSPSKRLQ DMGSGESGSF SPSPPQKQLK IENDMLRRIP SSLLTRTPIR QNDSCTIEFD GASKGNPGKA GAGAVLRASD NSVLFYLREG VGNATNNVAE
201: YRALLLGLRS ALDKGFKNVH VLGDSMLVCM QVQGAWKTNH PKMAELCKQA KELMNSFKTF DIKHIAREKN SEADKQANSA IFLADGQTQV ISGG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.