CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71303	Canola	nucleus	81.87	73.4
CDX91946	Canola	cytosol	60.44	56.7
CDX74299	Canola	cytosol	60.99	56.63
PGSC0003DMT400085909	Potato	cytosol	27.47	43.86
GSMUA_Achr9P16450_001	Banana	nucleus	41.76	40.64
HORVU5Hr1G067140.3	Barley	nucleus	31.32	38.0
CDY28678	Canola	nucleus	59.89	35.97
Solyc02g087130.2.1	Tomato	nucleus	45.05	28.47
Zm00001d032798_P001	Maize	nucleus	45.6	28.42
Solyc02g087140.2.1	Tomato	cytosol	45.05	28.37
KXG38410	Sorghum	cytosol	44.51	27.74
KRH18596	Soybean	nucleus	42.31	27.21
Zm00001d049892_P001	Maize	mitochondrion	34.62	26.58
Os10t0458700-02	Rice	nucleus, plasma membrane	45.05	25.39
TraesCS1D01G143400.1	Wheat	cytosol, nucleus, plastid	44.51	25.0
TraesCS1A01G144300.2	Wheat	cytosol, nucleus, plastid	44.51	25.0
TraesCS1B01G161700.1	Wheat	cytosol	35.16	24.06
TraesCS7A01G025300.1	Wheat	mitochondrion	45.6	23.92
Os08t0177800-00	Rice	mitochondrion	45.6	23.65
TraesCS4A01G463700.1	Wheat	plastid	45.05	23.63
TraesCS7D01G023200.1	Wheat	mitochondrion	45.05	23.5
TraesCS5A01G355500.1	Wheat	plastid	43.96	23.46
KXG21007	Sorghum	mitochondrion	42.86	23.01
GSMUA_Achr9P17780_001	Banana	mitochondrion	39.56	22.93
TraesCS5D01G363800.1	Wheat	golgi, mitochondrion	44.51	20.56
Zm00001d035750_P001	Maize	plastid	34.07	20.46
CDY16247	Canola	cytosol, nucleus, plastid	36.26	17.01
GSMUA_Achr9P16430_001	Banana	plasma membrane	12.64	12.71
CDY60797	Canola	golgi, nucleus, plastid	36.81	11.04
CDY16246	Canola	mitochondrion	12.09	10.19

Protein Annotations

MapMan:15.3.7.2.2	Gene3D:3.30.420.10	GO:A0A078CB37	EnsemblPlants:CDX74301	ProteinID:CDX74301	ProteinID:CDX74301.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004523	GO:GO:0005488
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00112094001	InterPro:IPR002156	InterPro:IPR036397	PFAM:PF13456	PFscan:PS50879
PANTHER:PTHR33033	PANTHER:PTHR33033:SF30	InterPro:RNaseH-like_sf	InterPro:RNaseH_domain	InterPro:RNaseH_sf	SUPFAM:SSF53098
UniParc:UPI0004EEF479	:	:	:	:	:

Description

BnaA03g27460D

Coordinates

chrLK031800:-:2121130..2123835

Molecular Weight (calculated)

19760.1 Da

IEP (calculated)

8.211

GRAVY (calculated)

-0.549

Length

182 amino acids

Sequence
(BLAST)

001: MIVGSSYSIT ICRKPFALLA MARRDSPPNF AQDSCTIEFD GASRGNPGRA GAGAVLRAPD NTVLFRSREG LGSATNNVAE YRALNLGLET ALNNGFRNVR
101: VQGDSQLVCK QVQGEWRTHH PKMAELCGQA QGLMSQFDSC DIQHVPREFN SEADAQASRA TNLAQGESQY DNAGRGYGRR GY

Best Arabidopsis Sequence Match ( AT3G01410.1 )
(BLAST)

001: MGSTMEDEKD AFYIVRKGDI IGVYRSLSEC QGQAGSSVSH PAMSVYKGYG WPKGAEDLLS SFGIKNALFS VNASHVKDDA FGKLIPCPVQ QPSSSQGESL
101: NKSSPSKRLQ DMGSGESGSF SPSPPQKQLK IENDMLRRIP SSLLTRTPIR QNDSCTIEFD GASKGNPGKA GAGAVLRASD NSVLFYLREG VGNATNNVAE
201: YRALLLGLRS ALDKGFKNVH VLGDSMLVCM QVQGAWKTNH PKMAELCKQA KELMNSFKTF DIKHIAREKN SEADKQANSA IFLADGQTQV ISGG

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JEB4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.