CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH18596

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64520.1	KRH18596	AT3G01410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42301	Soybean	nucleus	95.99	98.5
VIT_02s0025g02010.t01	Wine grape	cytosol	87.59	89.89
Bra040915.1-P	Field mustard	cytosol	83.21	85.39
CDY47840	Canola	cytosol	83.21	85.39
GSMUA_Achr11P...	Banana	cytosol	83.21	85.39
CDY69533	Canola	cytosol	82.85	85.02
Bra027705.1-P	Field mustard	cytosol	82.48	84.64
CDY62022	Canola	extracellular	82.48	84.64
GSMUA_Achr1P21260_001	Banana	cytosol	82.48	84.64
AT1G64520.1	Thale cress	nucleus	82.12	84.27
PGSC0003DMT400031956	Potato	cytosol	81.75	83.9
Solyc08g082700.2.1	Tomato	cytosol, extracellular, nucleus, plastid	81.02	83.15
Os07t0435100-01	Rice	cytosol, plasma membrane, plastid	80.66	82.77
EES13525	Sorghum	cytosol	80.29	82.4
Zm00001d024319_P001	Maize	cytosol, extracellular	79.56	81.65
TraesCS7A01G065500.1	Wheat	cytosol, golgi	75.55	77.53
TraesCS4B01G049700.1	Wheat	cytosol	75.18	77.15
TraesCS4D01G050100.1	Wheat	cytosol	72.26	77.04
TraesCS4A01G422100.1	Wheat	cytosol	74.82	76.78
TraesCS7D01G059900.1	Wheat	cytosol	74.82	76.78
TraesCS6B01G357900.1	Wheat	cytosol	72.63	74.81
AT5G42040.1	Thale cress	cytosol	63.5	74.68
Zm00001d039483_P001	Maize	cytosol	79.93	67.59
Zm00001d040137_P001	Maize	cytosol	33.21	60.26
Zm00001d019655_P001	Maize	cytosol	14.23	59.09
TraesCS4D01G012200.1	Wheat	mitochondrion	15.69	43.43
HORVU2Hr1G099580.8	Barley	nucleus	51.09	41.18

Protein Annotations

Gene3D:1.25.40.990	EntrezGene:100785835	MapMan:19.2.6.2.2.11	InterPro:26S_Psome_Rpn12	EMBL:ACUP02003258	InterPro:CSN8_PSD8_EIF3K
EnsemblPlantsGene:GLYMA_05G127300	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0005838	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008541
GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0043161	GO:GO:0043248
UniProt:I1K2Z9	InterPro:IPR000717	EnsemblPlants:KRH58430	ProteinID:KRH58430	ProteinID:KRH58430.1	InterPro:PCI_dom
PFAM:PF10075	PFscan:PS50250	PANTHER:PTHR12387	UniParc:UPI00023C4DA5	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:-:32021918..32025620

Molecular Weight (calculated)

31542.7 Da

IEP (calculated)

4.791

GRAVY (calculated)

-0.262

Length

274 amino acids

Sequence
(BLAST)

001: MDPKLKEVSQ LFDRFKASFI RNDFDTCSNL LSQLKVLLTG FRSLPPLFAD TPNAVHELTI ASNILPPIRD IYEHAVVLSV KNEDQDAFER DFFQLKPYYT
101: DACNRLPPSP QEYPILGLNL LRLLVQNRIA EFHTELELLS SAALENPCIK HAVELEQSFM EGAYNRVLSA RQTVPHDTYV YFMDLLAKTV RDEIAGCSEK
201: AYDYLSIKDA KQMLLFSSDQ ELLEYIKEEH PEWEIKNGSV FFQKAKESAP CKEIPSLQLI NQTLSYAREL ERIV

Best Arabidopsis Sequence Match ( AT1G64520.1 )
(BLAST)

001: MDPQLTEVSQ QFERFKAAFA RKDYNTCSDL LSQLKVLLTK FTSLPPLFEN SPNAAKELTI ARDIYEHAVV LSVKTEDQDA FERDFFQLKP YYVDARNRIP
101: QSPQENLILG LNLLRLLVQN RIAEFHTELE LLSSATLEDP CIKHAVELEQ SFMEGAYNRV LSARQTAPDA TYVYFMDLLA KTIRDEIAGC SEKAYDYVSI
201: SDARQMLLFS SDQELLTYVT DEHPEWEVKE GFVVFQKAKE TAPCKEIPSL QLINQTLSYA RELERIV

Arabidopsis Description

RPN12ARPN12a [Source:UniProtKB/TrEMBL;Acc:A0A178WH62]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.