CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY28678

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64520.1	CDY28678	AT3G01410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69533	Canola	cytosol	99.63	99.63
Bra027705.1-P	Field mustard	cytosol	99.25	99.25
CDY47840	Canola	cytosol	99.25	99.25
AT1G64520.1	Thale cress	nucleus	95.13	95.13
VIT_02s0025g02010.t01	Wine grape	cytosol	83.9	83.9
KRH42301	Soybean	nucleus	83.9	83.9
KRH58430	Soybean	nucleus	84.64	82.48
PGSC0003DMT400031956	Potato	cytosol	82.4	82.4
Solyc08g082700.2.1	Tomato	cytosol, extracellular, nucleus, plastid	81.27	81.27
GSMUA_Achr11P...	Banana	cytosol	79.4	79.4
Os07t0435100-01	Rice	cytosol, plasma membrane, plastid	78.65	78.65
GSMUA_Achr1P21260_001	Banana	cytosol	77.9	77.9
EES13525	Sorghum	cytosol	76.03	76.03
Zm00001d024319_P001	Maize	cytosol, extracellular	76.03	76.03
TraesCS7A01G065500.1	Wheat	cytosol, golgi	72.66	72.66
TraesCS4D01G050100.1	Wheat	cytosol	69.66	72.37
TraesCS4B01G049700.1	Wheat	cytosol	72.28	72.28
TraesCS7D01G059900.1	Wheat	cytosol	72.28	72.28
TraesCS4A01G422100.1	Wheat	cytosol	71.91	71.91
TraesCS6B01G357900.1	Wheat	cytosol	70.04	70.3
Zm00001d039483_P001	Maize	cytosol	76.03	62.65
Zm00001d040137_P001	Maize	cytosol	31.46	55.63
Zm00001d019655_P001	Maize	cytosol	13.48	54.55
TraesCS4D01G012200.1	Wheat	mitochondrion	15.73	42.42
HORVU2Hr1G099580.8	Barley	nucleus	50.94	40.0

Protein Annotations

Gene3D:1.25.40.990	MapMan:19.2.6.2.2.11	InterPro:26S_Psome_Rpn12	GO:A0A078JA18	UniProt:A0A078JA18	EnsemblPlants:CDY62022
ProteinID:CDY62022	ProteinID:CDY62022.1	InterPro:CSN8_PSD8_EIF3K	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005838	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00035842001
InterPro:IPR000717	InterPro:PCI_dom	PFAM:PF10075	PFscan:PS50250	PANTHER:PTHR12387	UniParc:UPI0004EC2E97
SEG:seg	:	:	:	:	:

Description

BnaCnng39010DBnaCnng39010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JA18]

Coordinates

chrLK034081:-:23498..25296

Molecular Weight (calculated)

30695.6 Da

IEP (calculated)

4.538

GRAVY (calculated)

-0.275

Length

267 amino acids

Sequence
(BLAST)

001: MDPQLTEVSQ QLERFKAAFV RKDYNTCSDL LSRLKVLLTK FTSLPPLFEN TPNAAQELAI ARDIYEHAVV LSVKTEDQDA FERDFFQLKP YYVDARDRLP
101: PSPQENLILG LNLLRLLVQN RIAEFHTELE LLSSATLENP CIKHAVELEQ SFMEGAYNRV LSARQTAPDA TYVYFMDLLA KTIRDEIAGC SEKAYDYVSI
201: SDARQMLLFS SDQELLTYVN EEHPEWEVKD GFVVFQKAKE TAPCKEIPSL QLINQTLSYA RELERIV

Best Arabidopsis Sequence Match ( AT1G64520.1 )
(BLAST)

001: MDPQLTEVSQ QFERFKAAFA RKDYNTCSDL LSQLKVLLTK FTSLPPLFEN SPNAAKELTI ARDIYEHAVV LSVKTEDQDA FERDFFQLKP YYVDARNRIP
101: QSPQENLILG LNLLRLLVQN RIAEFHTELE LLSSATLEDP CIKHAVELEQ SFMEGAYNRV LSARQTAPDA TYVYFMDLLA KTIRDEIAGC SEKAYDYVSI
201: SDARQMLLFS SDQELLTYVT DEHPEWEVKE GFVVFQKAKE TAPCKEIPSL QLINQTLSYA RELERIV

Arabidopsis Description

RPN12ARPN12a [Source:UniProtKB/TrEMBL;Acc:A0A178WH62]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.