Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400085909 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G64520.1 | PGSC0003DMT400085909 | AT3G01410.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g082700.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 97.75 | 97.75 |
| KRH42301 | Soybean | nucleus | 83.15 | 83.15 |
| VIT_02s0025g02010.t01 | Wine grape | cytosol | 82.77 | 82.77 |
| Bra040915.1-P | Field mustard | cytosol | 82.77 | 82.77 |
| CDY47840 | Canola | cytosol | 82.77 | 82.77 |
| CDY62022 | Canola | extracellular | 82.4 | 82.4 |
| CDY69533 | Canola | cytosol | 82.4 | 82.4 |
| Bra027705.1-P | Field mustard | cytosol | 82.02 | 82.02 |
| KRH58430 | Soybean | nucleus | 83.9 | 81.75 |
| AT1G64520.1 | Thale cress | nucleus | 81.65 | 81.65 |
| GSMUA_Achr11P... | Banana | cytosol | 79.78 | 79.78 |
| GSMUA_Achr1P21260_001 | Banana | cytosol | 79.4 | 79.4 |
| Os07t0435100-01 | Rice | cytosol, plasma membrane, plastid | 77.9 | 77.9 |
| EES13525 | Sorghum | cytosol | 76.78 | 76.78 |
| Zm00001d024319_P001 | Maize | cytosol, extracellular | 75.66 | 75.66 |
| TraesCS4D01G050100.1 | Wheat | cytosol | 70.79 | 73.54 |
| TraesCS4B01G049700.1 | Wheat | cytosol | 73.41 | 73.41 |
| TraesCS7A01G065500.1 | Wheat | cytosol, golgi | 73.03 | 73.03 |
| TraesCS4A01G422100.1 | Wheat | cytosol | 72.28 | 72.28 |
| TraesCS7D01G059900.1 | Wheat | cytosol | 72.28 | 72.28 |
| TraesCS6B01G357900.1 | Wheat | cytosol | 70.04 | 70.3 |
| AT5G42040.1 | Thale cress | cytosol | 61.05 | 69.96 |
| Zm00001d039483_P001 | Maize | cytosol | 77.15 | 63.58 |
| Zm00001d040137_P001 | Maize | cytosol | 31.46 | 55.63 |
| Zm00001d019655_P001 | Maize | cytosol | 12.73 | 51.52 |
| HORVU2Hr1G099580.8 | Barley | nucleus | 50.56 | 39.71 |
| TraesCS4D01G012200.1 | Wheat | mitochondrion | 14.61 | 39.39 |
Protein Annotations
| Gene3D:1.25.40.990 | EntrezGene:102603250 | MapMan:19.2.6.2.2.11 | InterPro:26S_Psome_Rpn12 | InterPro:CSN8_PSD8_EIF3K | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005838 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0019538 | InterPro:IPR000717 | UniProt:M1AWK7 | InterPro:PCI_dom | PFAM:PF10075 | EnsemblPlantsGene:PGSC0003DMG400012259 |
| PGSC:PGSC0003DMG400012259 | EnsemblPlants:PGSC0003DMT400031956 | PFscan:PS50250 | PANTHER:PTHR12387 | UniParc:UPI000294AED3 | RefSeq:XP_006343823.1 |
| SEG:seg | : | : | : | : | : |
Description
26S proteasome regulatory particle non-ATPase subunit 12 [Source:PGSC_GENE;Acc:PGSC0003DMG400012259]
Coordinates
chr8:+:56283278..56288965
Molecular Weight (calculated)
30779.8 Da
IEP (calculated)
4.786
GRAVY (calculated)
-0.224
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPKITEVSQ TFERFKAAFV RNDFDTCTRL LSQLKVLLTA FTSLPPLFQE TSNAIHELTI ARDIYEHAVV LSVKMEDQDA FERDFFQLKP YYTDARGRLP
101: ASPQEYPILG LNLLRLLVQN RIAEFHTELE LLSQSALDNP CIKHAVELEQ SFMEGAYHRV LSARQTVPDA TYAYFMDLLA KTVRDEIAGC SEKAYDRLST
201: SDARQILLFS SDKELLQYVE TEHPEWEIKD GFIIFQKVKD SVPCKEIPSL QLITQTLSYA RELERIV
101: ASPQEYPILG LNLLRLLVQN RIAEFHTELE LLSQSALDNP CIKHAVELEQ SFMEGAYHRV LSARQTVPDA TYAYFMDLLA KTVRDEIAGC SEKAYDRLST
201: SDARQILLFS SDKELLQYVE TEHPEWEIKD GFIIFQKVKD SVPCKEIPSL QLITQTLSYA RELERIV
001: MDPQLTEVSQ QFERFKAAFA RKDYNTCSDL LSQLKVLLTK FTSLPPLFEN SPNAAKELTI ARDIYEHAVV LSVKTEDQDA FERDFFQLKP YYVDARNRIP
101: QSPQENLILG LNLLRLLVQN RIAEFHTELE LLSSATLEDP CIKHAVELEQ SFMEGAYNRV LSARQTAPDA TYVYFMDLLA KTIRDEIAGC SEKAYDYVSI
201: SDARQMLLFS SDQELLTYVT DEHPEWEVKE GFVVFQKAKE TAPCKEIPSL QLINQTLSYA RELERIV
101: QSPQENLILG LNLLRLLVQN RIAEFHTELE LLSSATLEDP CIKHAVELEQ SFMEGAYNRV LSARQTAPDA TYVYFMDLLA KTIRDEIAGC SEKAYDYVSI
201: SDARQMLLFS SDQELLTYVT DEHPEWEVKE GFVVFQKAKE TAPCKEIPSL QLINQTLSYA RELERIV
Arabidopsis Description
RPN12ARPN12a [Source:UniProtKB/TrEMBL;Acc:A0A178WH62]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.