Factsheet for GSMUA_Achr1P21260_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr9P16430_001
GSMUA_Achr9P16450_001
GSMUA_Achr9P17780_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64520.1	GSMUA_Achr9P16430_001	AT3G01410.1	21798944
AT1G64520.1	GSMUA_Achr9P16450_001	AT3G01410.1	21798944
AT1G64520.1	GSMUA_Achr9P17780_001	AT3G01410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	91.76	91.76
VIT_02s0025g02010.t01	Wine grape	cytosol	84.27	84.27
KRH42301	Soybean	nucleus	83.9	83.9
Os07t0435100-01	Rice	cytosol, plasma membrane, plastid	82.77	82.77
KRH58430	Soybean	nucleus	84.64	82.48
EES13525	Sorghum	cytosol	82.02	82.02
Zm00001d024319_P001	Maize	cytosol, extracellular	82.02	82.02
PGSC0003DMT400031956	Potato	cytosol	79.4	79.4
Solyc08g082700.2.1	Tomato	cytosol, extracellular, nucleus, plastid	78.65	78.65
Bra040915.1-P	Field mustard	cytosol	78.28	78.28
CDY47840	Canola	cytosol	78.28	78.28
CDY62022	Canola	extracellular	77.9	77.9
CDY69533	Canola	cytosol	77.9	77.9
AT1G64520.1	Thale cress	nucleus	77.53	77.53
Bra027705.1-P	Field mustard	cytosol	77.53	77.53
TraesCS7A01G065500.1	Wheat	cytosol, golgi	76.78	76.78
TraesCS4D01G050100.1	Wheat	cytosol	73.78	76.65
TraesCS4A01G422100.1	Wheat	cytosol	76.4	76.4
TraesCS4B01G049700.1	Wheat	cytosol	76.4	76.4
TraesCS7D01G059900.1	Wheat	cytosol	76.4	76.4
TraesCS6B01G357900.1	Wheat	cytosol	73.78	74.06
AT5G42040.1	Thale cress	cytosol	59.18	67.81
Zm00001d039483_P001	Maize	cytosol	81.65	67.28
Zm00001d040137_P001	Maize	cytosol	33.71	59.6
Zm00001d019655_P001	Maize	cytosol	13.86	56.06
TraesCS4D01G012200.1	Wheat	mitochondrion	16.1	43.43
HORVU2Hr1G099580.8	Barley	nucleus	53.56	42.06

Protein Annotations

EnsemblPlants:GSMUA_Achr1P21260_001	EnsemblPlants:GSMUA_Achr1T21260_001	EnsemblPlantsGene:GSMUA_Achr1G21260_001	Gene3D:1.25.40.990	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005838	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0019538
InterPro:26S_Psome_Rpn12	InterPro:CSN8_PSD8_EIF3K	InterPro:IPR000717	InterPro:PCI_dom	PANTHER:PTHR12387	PFAM:PF10075
PFscan:PS50250	SEG:seg	UniParc:UPI000296BAF0	UniProt:M0S1T4	MapMan:19.2.6.2.2.11	:

Description

26S proteasome non-ATPase regulatory subunit RPN12A [Source:GMGC_GENE;Acc:GSMUA_Achr1G21260_001]

Coordinates

chr1:+:16013428..16016471

Molecular Weight (calculated)

30595.4 Da

IEP (calculated)

4.465

GRAVY (calculated)

-0.240

Length

267 amino acids

Sequence
(BLAST)

001: MDPQLVELTQ LFERFKAACV RNDFSTCANL LSQLKVRLTA FPSLPPSFQE TPSAVQELTI ARDIFEHAVV LSVKTEDQDA FERDFFQLKP YYTDTSGIIP
101: PSPQEYPILG LNLLRLLVQN RIAEFHTELE LLPQSALENA CIKHAVELEQ SFMEGAYNRV LSARQTVPHD TYVYFMDLLA KTVRDEIAGC SEKAYDYLSI
201: NDAKKILMFS SDQELSEYIT EEHPEWEINN GCVFFQKAKE SQPSKEIPAL QLINQTLSYA RELERIV

Best Arabidopsis Sequence Match ( AT1G64520.1 )
(BLAST)

001: MDPQLTEVSQ QFERFKAAFA RKDYNTCSDL LSQLKVLLTK FTSLPPLFEN SPNAAKELTI ARDIYEHAVV LSVKTEDQDA FERDFFQLKP YYVDARNRIP
101: QSPQENLILG LNLLRLLVQN RIAEFHTELE LLSSATLEDP CIKHAVELEQ SFMEGAYNRV LSARQTAPDA TYVYFMDLLA KTIRDEIAGC SEKAYDYVSI
201: SDARQMLLFS SDQELLTYVT DEHPEWEVKE GFVVFQKAKE TAPCKEIPSL QLINQTLSYA RELERIV

Arabidopsis Description

RPN12ARPN12a [Source:UniProtKB/TrEMBL;Acc:A0A178WH62]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.