Factsheet for Solyc08g082700.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g087130.2.1
Solyc02g087140.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64520.1	Solyc02g087130.2.1	AT3G01410.1	21798944
AT1G64520.1	Solyc02g087140.2.1	AT3G01410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031956	Potato	cytosol	97.75	97.75
KRH42301	Soybean	nucleus	82.77	82.77
VIT_02s0025g02010.t01	Wine grape	cytosol	82.02	82.02
Bra040915.1-P	Field mustard	cytosol	81.65	81.65
CDY47840	Canola	cytosol	81.65	81.65
CDY62022	Canola	extracellular	81.27	81.27
CDY69533	Canola	cytosol	81.27	81.27
KRH58430	Soybean	nucleus	83.15	81.02
AT1G64520.1	Thale cress	nucleus	80.9	80.9
Bra027705.1-P	Field mustard	cytosol	80.9	80.9
GSMUA_Achr11P...	Banana	cytosol	79.78	79.78
GSMUA_Achr1P21260_001	Banana	cytosol	78.65	78.65
EES13525	Sorghum	cytosol	77.15	77.15
Os07t0435100-01	Rice	cytosol, plasma membrane, plastid	76.78	76.78
Zm00001d024319_P001	Maize	cytosol, extracellular	76.4	76.4
TraesCS4D01G050100.1	Wheat	cytosol	70.04	72.76
TraesCS4B01G049700.1	Wheat	cytosol	72.66	72.66
TraesCS7A01G065500.1	Wheat	cytosol, golgi	72.28	72.28
TraesCS4A01G422100.1	Wheat	cytosol	71.54	71.54
TraesCS7D01G059900.1	Wheat	cytosol	71.54	71.54
TraesCS6B01G357900.1	Wheat	cytosol	69.66	69.92
AT5G42040.1	Thale cress	cytosol	59.93	68.67
Zm00001d039483_P001	Maize	cytosol	76.78	63.27
Zm00001d040137_P001	Maize	cytosol	31.46	55.63
Zm00001d019655_P001	Maize	cytosol	12.73	51.52
HORVU2Hr1G099580.8	Barley	nucleus	50.94	40.0
TraesCS4D01G012200.1	Wheat	mitochondrion	14.61	39.39

Protein Annotations

Gene3D:1.25.40.990	MapMan:19.2.6.2.2.11	InterPro:26S_Psome_Rpn12	InterPro:CSN8_PSD8_EIF3K	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0005838	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008541	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043
GO:GO:0019538	GO:GO:0043161	GO:GO:0043248	InterPro:IPR000717	UniProt:K4CPR6	InterPro:PCI_dom
PFAM:PF10075	PFscan:PS50250	PANTHER:PTHR12387	EnsemblPlantsGene:Solyc08g082700.2	EnsemblPlants:Solyc08g082700.2.1	UniParc:UPI000276C8CA
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:65402517..65407377

Molecular Weight (calculated)

30761.8 Da

IEP (calculated)

4.967

GRAVY (calculated)

-0.240

Length

267 amino acids

Sequence
(BLAST)

001: MDPKITEVSQ TFERFKAAVV RNDFDACTRL LSQLKVLLTS FTSLPPLFQE TSNAIHELTI ARDIYEHAVV LSVKMEDQDA FERDFFQLKP YYTDARGRLP
101: ASPQEYPILG LNLLRLLVQN RIAEFHTELE LLSQSALDNP CIKHAVELEQ SFMEGAYHRV LSARQTVPDA TYAYFMDLLA KTVRDEIAGC SEKAYDRLST
201: SDARQILLFS SDKELLQYVE KEHPEWEMKN GFIIFQKVKD SVPCKEIPSL QLITQTLSYA RELERIV

Best Arabidopsis Sequence Match ( AT1G64520.1 )
(BLAST)

001: MDPQLTEVSQ QFERFKAAFA RKDYNTCSDL LSQLKVLLTK FTSLPPLFEN SPNAAKELTI ARDIYEHAVV LSVKTEDQDA FERDFFQLKP YYVDARNRIP
101: QSPQENLILG LNLLRLLVQN RIAEFHTELE LLSSATLEDP CIKHAVELEQ SFMEGAYNRV LSARQTAPDA TYVYFMDLLA KTIRDEIAGC SEKAYDYVSI
201: SDARQMLLFS SDQELLTYVT DEHPEWEVKE GFVVFQKAKE TAPCKEIPSL QLINQTLSYA RELERIV

Arabidopsis Description

RPN12ARPN12a [Source:UniProtKB/TrEMBL;Acc:A0A178WH62]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.